Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00790 ATGATGGTGGAGACGTCGCTTGATTTTCTGTTTCCATCTTGGTGGGAGATAGAGGTTACTGTAGCAACATCAATCTTCGTCATCTCAGCCTATTGGTTTTTCACTTACCGAAGCGGAGATGATCAAGTGGATCGCTCGCGAGTTGAAATTTCTAGTAGGGAAGCTATTGATGTTAATGACAAGGTAATTTCGTCGTATTTGACGCTTTGGAATAACATGTTGCGTAATTTGGAATTGTTGGCAGCAAAGAACCTTATTGGTGCAAACTTGAATGGAACCTCTGATCCCTATGCTATAATTACATGTGGTACACAAAAGCGATTCAGCTCAATGATTCCTGGTTCCAGAAATCCTATGTGGGGAGAGGAGTTTAATTTTTTTGTGGACGACCTTCCTGTTAAGATTAATATCACAATATATGACTGGGATATAATATGGAAAAGCGCTGTCCTTGGTTCAGTTACTGTTCCAGTTGAAAATGAAGGTCAAACTGGTGCTGTGTGGTATACATTGAACAGTCCCTCTGGACAGGTATGCCTTCACCTTAAAACAATAAAAATGCCTGTAAATGCTCCCAGTGACATTTATAATATGAAATCCTTTGAGTTTGTCTCCAGTGATATGAGTGGCTATGCTGGAACCAATATTCGAAGAAGGATTTCCATAGACAAACAAGTGCCAACGGTGGTTGTTGTCCATAGTTATTCTTGTGCTCTTGAGAGGTCATTTCTATATCATGGTCGAATGTTTGTATCTGCATGGAATATTTGTTTCCATTCAAATGTTTTCTCCAAGCAAATGAAGGTGGTGATACCATTGGGAGATATAGATGAGATACGACGGAGTCAACATGCATTCATTAATCCTGCTATAACAATTACTCTCCGCATGGGTGCTGGTGGGCATGGTGTGCCTCCATTGGGAAGTCCTGATGGGAGAGTGAGATATATGTTTGCATCATTTTGGAACAGGAACCACGCAATAAGAGGCTTACAGCGTTCAGTGAAGAGTTTTCATGCAATGCTAGAGGCTGAAAAGAAGGAGAAGGCTGAATCGGAACTACGCGCACATAGTAGCTCTATTAAGGGAAGCAAAAGGCATGTCAAGATAACAAATGAAACTGTACCCATAAATGGGAACGTTCCCTCTTTTATTAAAGAAGAAGTTCTTTGTGAAATATACAAAGGTGTTTTCCAGAGTACTGCTGAACAGTTTTTCAATTTATATTTGAGTGATGAGTCAACTTTTACAAATTCATATCGGTTAGCACGGAAAGATACTAATCTTATTATGGGACAATGGCATACTGCAGATCAGTATGATGGTCAAGTAAGGGAGATCACATATAGATCGCTTTGTAAAAGTCCAATGTGCCCACCTGACACAGCCATGACCGAGTGGCAGCATGCTGTTTTATCTCCAGACAAGAACAAGCTGGTATTTGAGACTGTACAACAAGCGCATGATGTTCCATTTGGCTCCAACTTTGAGGTATTAAATGTTTTGAGTATCTTGCTTTATAGACTTAGTTGTTGTTGA 1539 40.09 MMVETSLDFLFPSWWEIEVTVATSIFVISAYWFFTYRSGDDQVDRSRVEISSREAIDVNDKVISSYLTLWNNMLRNLELLAAKNLIGANLNGTSDPYAIITCGTQKRFSSMIPGSRNPMWGEEFNFFVDDLPVKINITIYDWDIIWKSAVLGSVTVPVENEGQTGAVWYTLNSPSGQVCLHLKTIKMPVNAPSDIYNMKSFEFVSSDMSGYAGTNIRRRISIDKQVPTVVVVHSYSCALERSFLYHGRMFVSAWNICFHSNVFSKQMKVVIPLGDIDEIRRSQHAFINPAITITLRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAIRGLQRSVKSFHAMLEAEKKEKAESELRAHSSSIKGSKRHVKITNETVPINGNVPSFIKEEVLCEIYKGVFQSTAEQFFNLYLSDESTFTNSYRLARKDTNLIMGQWHTADQYDGQVREITYRSLCKSPMCPPDTAMTEWQHAVLSPDKNKLVFETVQQAHDVPFGSNFEVLNVLSILLYRLSCC 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5984718 5995159 - Bpe014168.1 Bpe14g00790 115099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00790 512 Gene3D C2 domain 68 187 IPR035892 -
Bpe14g00790 512 CDD C2 77 171 - -
Bpe14g00790 512 Pfam VAD1 Analog of StAR-related lipid transfer domain 393 500 IPR031968 -
Bpe14g00790 512 Pfam C2 domain 78 171 IPR000008 -
Bpe14g00790 512 SMART gram2001c 216 283 IPR004182 -
Bpe14g00790 512 PRINTS C2 domain signature 90 102 IPR000008 -
Bpe14g00790 512 PRINTS C2 domain signature 135 143 IPR000008 -
Bpe14g00790 512 PRINTS C2 domain signature 114 127 IPR000008 -
Bpe14g00790 512 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 2 500 - -
Bpe14g00790 512 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 78 185 IPR035892 -
Bpe14g00790 512 ProSiteProfiles C2 domain profile. 52 171 IPR000008 -
Bpe14g00790 512 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 2 500 IPR044655 -
Bpe14g00790 512 Pfam GRAM domain 232 286 IPR004182 -
Bpe14g00790 512 ProSiteProfiles VASt domain profile. 386 512 IPR031968 -
Bpe14g00790 512 SMART C2_3c 74 170 IPR000008 -
Bpe14g00790 512 Gene3D - 223 337 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00790 - - - cit:102623446 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00995 Bpe-Chr11:7416181 Bpe14g00790 Bpe-Chr14:5984718 1.46E-08 dispersed
Bpe13g00792 Bpe-Chr13:14312605 Bpe14g00790 Bpe-Chr14:5984718 2.82E-08 dispersed
Bpe14g00790 Bpe-Chr14:5984718 Bpe04g00063 Bpe-Chr4:514467 2.89E-07 dispersed
Bpe14g00790 Bpe-Chr14:5984718 Bpe13g01149 Bpe-Chr13:16954610 7.07E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00790 Bpe_Chr14 FPKM 4.421687 0.0 0.0 0.0 9.267148 0.0 0.0 12.019751 15.011484 0.0