Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00793 ATGGGTTTCATTCTCAAGAACTCCCAATACTTCGACTGGTGCTCACGCTGCAAGCATGGTTCAGGAAGTGAAAAAGAGAGCGCGAGGAGGCACAGGCAGCCACCAAAAGAGAGGAGGCGTTGCAGAGGAAGCATCATACCTCAAGCAAGACAGGATGCCACGTGTATGATAGTACTTGTGGGGTCGCACATTGAGTTCTATATAAAGGAGCAGAAACTGTTGATGGAAGGGAGAAGACAGAGGAGGCTCAGGCGATCTACCGAGAGACTACCTATCGCTTCGATCGACGATCTCGCTTACGATTCTTTATCGTTGTTTGATTGCTGCGTGACAATGACTACGTCCAGGCGTTTGGCTGACAGGAAGGTGCAGAAGTTCGAGAAGAACATTACCAAGAGAGGTGCTGTGCCTGAGTCGACCAGTAAGAAAGGAAAGGACTATCCTGTTGGTCCTATTCTTCTTGGGTTCTTCGTATTTGTTGTCATTGGATCATCTCTCTTTCAGATAATCAGGACAGCAGCTAGCGGAGGCATGGCATAA 540 48.33 MGFILKNSQYFDWCSRCKHGSGSEKESARRHRQPPKERRRCRGSIIPQARQDATCMIVLVGSHIEFYIKEQKLLMEGRRQRRLRRSTERLPIASIDDLAYDSLSLFDCCVTMTTSRRLADRKVQKFEKNITKRGAVPESTSKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTAASGGMA 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6011586 6014434 - Bpe014171.1 Bpe14g00793 115102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00793 179 MobiDBLite consensus disorder prediction 19 40 - -
Bpe14g00793 179 Pfam Ribosome associated membrane protein RAMP4 116 172 IPR010580 GO:0005783
Bpe14g00793 179 PANTHER STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN 111 179 - -
Bpe14g00793 179 PANTHER STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4 111 179 IPR010580 GO:0005783
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00793 - - - mesc:110629484 132.494
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00030 Bpe-Chr8:187252 Bpe14g00793 Bpe-Chr14:6011586 6.22E-32 transposed
Bpe09g00533 Bpe-Chr9:14120187 Bpe14g00793 Bpe-Chr14:6011586 1.18E-26 transposed
Bpe13g00810 Bpe-Chr13:14434833 Bpe14g00793 Bpe-Chr14:6011586 1.14E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1262 Blo01g00178 . . Bda11g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00192 . . Bda11g00390 Bpe14g00793 . . Bma06g01347 . . . . . . . Cpe17g01075 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002650 2 2 3 3 3 0 4 1 1 1 0 1 3 1 2 4 0 3 1 0 2 2 2 0 2 2 1 4 2 0 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00793 Bpe_Chr14 FPKM 5.130466 5.012352 5.955217 6.032795 6.126975 6.456963 6.58082 9.345249 8.952219 9.00044