Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00816 TCTGCAGAGAATAGTCGGAGACGACACTACAGGGGGGTGAGGCAAAGGCCATGGGGAAAATGGGCAGCTGAAATCAGAGATCCGAAGAAGGCAGCCAGAGTTTGGCTGGGCACCTTCGACACCGCCGAGGACGCAGCCTTCGCCTACGACAGAGCAGCTCTCAAATTCAAAGGCAACAAAGCTAAGCTTAACTTTCCCGAAAGAGTTCAGCCTGTTCCTGCAGATCATCCCCTTCACCAACCTTCTGCAACTTCGTCTTCTTCTGCTGCTTCTGCACCTCTGAATCCAGTTTCCGATCAAGAACAAGCTTTTCCTCATCTTTATCACTACGCCCAGCTTTTGTCTAGCTCTGAAGCTGATTTCCCTTACCACTCGTCCAATCTTTTCAACCAGAATTACCAGCCCTCACCCTTCAGCGACTCCCATTCTCAGTTTTCGTCTTCTTTGTGGTCATCTTCCTCGTTTTCCGATCAGCAACAGCCGCCGGAAGAAGACAACGAAGATCAACAATGGCAGAAGTTCAATCCAAGGAATTAA 537 49.53 SAENSRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAFAYDRAALKFKGNKAKLNFPERVQPVPADHPLHQPSATSSSSAASAPLNPVSDQEQAFPHLYHYAQLLSSSEADFPYHSSNLFNQNYQPSPFSDSHSQFSSSLWSSSSFSDQQQPPEEDNEDQQWQKFNPRN 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6177253 6177789 + Bpe014193.1 Bpe14g00816 115125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00816 178 MobiDBLite consensus disorder prediction 69 98 - -
Bpe14g00816 178 CDD AP2 9 67 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 MobiDBLite consensus disorder prediction 133 160 - -
Bpe14g00816 178 Pfam AP2 domain 9 58 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 SUPERFAMILY DNA-binding domain 9 67 IPR016177 GO:0003677
Bpe14g00816 178 MobiDBLite consensus disorder prediction 79 98 - -
Bpe14g00816 178 MobiDBLite consensus disorder prediction 133 178 - -
Bpe14g00816 178 Gene3D AP2/ERF domain 8 68 IPR036955 GO:0003700|GO:0006355
Bpe14g00816 178 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Bpe14g00816 178 PANTHER DNA-BINDING DOMAIN 2 172 IPR044808 GO:0003700|GO:0009873
Bpe14g00816 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 2 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00816 - - - cmos:111461133 173.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01101 Bpe-Chr2:14624963 Bpe14g00816 Bpe-Chr14:6177253 4.00E-36 dispersed
Bpe05g00559 Bpe-Chr5:19748914 Bpe14g00816 Bpe-Chr14:6177253 1.15E-28 dispersed
Bpe08g00819 Bpe-Chr8:10295982 Bpe14g00816 Bpe-Chr14:6177253 1.95E-28 dispersed
Bpe12g00058 Bpe-Chr12:436846 Bpe14g00816 Bpe-Chr14:6177253 6.33E-29 dispersed
Bpe14g00816 Bpe-Chr14:6177253 Bpe15g00897 Bpe-Chr15:18866172 2.08E-30 dispersed
Bpe15g00389 Bpe-Chr15:15419249 Bpe14g00816 Bpe-Chr14:6177253 1.47E-32 transposed
Bpe14g00816 Bpe-Chr14:6177253 Bpe04g01040 Bpe-Chr4:7531396 6.23E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22481 PF00847 AP2 4.70E-14 CL0081 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00816 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.983723 0.0 0.759834 0.0 0.0 0.0