Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00817 ATGCGAAGATTGTGTAATCTGCTGATATCCTACTCCATTTCCTCTGGCAACCATTTCTCTTCTCAGCTGAGGATCAGCTACCCACTACCACACAATCTCTCCCGAAGGTTGTCGTCTTTCTCTCCCGCCTTCTGCCCAAGCTTCGTTCCCATGGCCGCAACTGAGGAATTGCTTCGCAATACTTTAGCCGAAAAGCAATCAGCTGTCGATGCTCAAGGCAACGCTGTGAGAGCTCTGAAAGCCTCCGGTGCTACTAAGCCCGAAATTGACGCTGCGATTGATGCCTTGAATGCGCTGAAGCTTGAAAAAGCTTCGGTTGAGAGGCAACTGCAAGCGATCATTGCTGGCGCGGGGGGTGATGGCTCTATTAGCAGGGAAACGTTTCGTCAAACGGTGGCTAATACTCTAGAGCGGCGTTTGTTTTATATTCCAGCGTTCAAGATTTATCGCGGGGTTGCTGGATTATACGATTACGGGCCTCCAGGTTGCGCCGTTAAGTCCAATGTCCTTGCATTCTGGCGTCAGCATTTTGTTCTCGAGGAAAATATGTTGGAAGTTGACTGCCCATGTGTCACCCCCGAGGTTGTTCTGAAGGCTTCTGGTCATGTTGATAAATTCACGGACCTCATGGTTAAAGATGAGAAAACAGGGACCTGCTTCCGTGCTGACCACTTGATTAAGGATTTTTGTAACGAGAAACTTCAAAAAGATCTCACTATCACTTCCGAGAAAGCAGCAGAGCTAAAGCATACACTTGCCGTCTTGGATGACCTCTCAGCTGAAGATTTAGGTGCAAAAATTAAGGAATATGGAATTACAGCTCCAGACACAAAAAATCCACTGTCTGCTCCTTATCCATTCAACTTAATGTTTCAGACATCAATTGGCCCATCCGGTTTGAGCCCTGGATACATGCGCCCTGAAACTGCACAAGGCATATTTGTCAATTTTAAAGATCTGTACTATTACAATGGGAACAAGCTTCCCTTTGCAGCAGCACAAATTGGTCAAGCTTTTAGGAATGAGATATCTCCCCGTCAAGGTCTTCTTAGAGTCCGCGAGTTCACACTGGCAGAGATTGAGCATTTTGTTGATCCAGAAGACAAGTCTCATCCAAAATTCTCTGATGTAGCAAATTTGGAGTTTTTGATGTTTCCAAGAGAAGAACAAATGTCTGGTAACTCAGCAAAGAAAATCCCTCTGGGTGAAGCAGTTGGAAGGGGAATTGTGAACAATGAAACTCTAGGCTATTTCATTGGAAGAGTATATTTATTCCTAACTCACCTTGGCATAGACAAAGATCGTTTACGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCATTATGCAGCTGACTGTTGGGATGCTGAAATCGAGTGTTCCTATGGCTGGATTGAGTGTGTTGGTATTGCAGATAGATCGGCCTATGACTTGCGTGCACATTCGGAGAAAAGTGGTGTCCTCCTTGTGGCGCAAGAAAAATTTTCAGAACCTAGAGAAGTGGAGAAATTGATCATAGCTCCAGTCAAGAAAGAAATAGGCCTTGCTTTTAAGGGTAACCAAAAGAATGTCGTTGAAGCTTTGGAGGCGATGGATGAAGAAGAAGCCTTCAAAATGAAAGCAACTCTTGAATCAGACGGGGAGGTGGAGTTTTACGTGTGTACACTTGGGAAAAATGTTTGTATAAAAAAGAACATGGTTGCGATTTCAAAGGAGAAAAAAAAGGAACATCAAAGAGTATTCACTCCCTCTGTGATCGAACCTTCCTTTGGTATTGGAAGGATAATCTACTGCCTCTTTGAACATTCCTATTACATGAGGCCTAGTAAAGCCGGCGATGAACAGTTGAATGTTTTCCGATTTCCGCCTCTTGTTGCACCAATTAAATGCACAGTTTTCCCTCTAGTTCAGAATCAACAGTACGAGGATGTCGCTAAAGTTATATCCAAGTCACTGACTCTAGCTGGTATCTCACATAAGATTGATATCACAGGCACCTCAATCGGCAAGCGATATGCAAGAACCGATGAGCTTGGTGTACCATTTGCCATAACAGTAGATTCGACAACTTCGGTTACCATCCGGGAAAGGGATAGCAAAGATCAAATCCGAGTTAATGTGGGAGATGCAGCATCTGTTGTGAAAGAAGTTACGGACGGACATAGGACATGGGATGACGTGTGGTCCAATTTCCCGCATCACACCTCGGCCGCCACAGAAGATTGA 2226 44.7 MRRLCNLLISYSISSGNHFSSQLRISYPLPHNLSRRLSSFSPAFCPSFVPMAATEELLRNTLAEKQSAVDAQGNAVRALKASGATKPEIDAAIDALNALKLEKASVERQLQAIIAGAGGDGSISRETFRQTVANTLERRLFYIPAFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLIKDFCNEKLQKDLTITSEKAAELKHTLAVLDDLSAEDLGAKIKEYGITAPDTKNPLSAPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSDVANLEFLMFPREEQMSGNSAKKIPLGEAVGRGIVNNETLGYFIGRVYLFLTHLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVLLVAQEKFSEPREVEKLIIAPVKKEIGLAFKGNQKNVVEALEAMDEEEAFKMKATLESDGEVEFYVCTLGKNVCIKKNMVAISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSYYMRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKVISKSLTLAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTTSVTIRERDSKDQIRVNVGDAASVVKEVTDGHRTWDDVWSNFPHHTSAATED 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6185508 6189522 + Bpe014194.1 Bpe14g00817 115126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00817 741 SUPERFAMILY Class II aaRS and biotin synthetases 130 632 IPR045864 -
Bpe14g00817 741 Coils Coil 89 109 - -
Bpe14g00817 741 Gene3D - 506 574 - -
Bpe14g00817 741 Gene3D - 66 108 - -
Bpe14g00817 741 SUPERFAMILY Class II aaRS ABD-related 617 733 - -
Bpe14g00817 741 Coils Coil 231 251 - -
Bpe14g00817 741 SMART WHEP_TRS_a_2_a_3_a 65 122 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe14g00817 741 SUPERFAMILY S15/NS1 RNA-binding domain 64 107 IPR009068 -
Bpe14g00817 741 Gene3D - 205 289 - -
Bpe14g00817 741 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 304 601 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe14g00817 741 CDD GlyRS_anticodon 599 719 - -
Bpe14g00817 741 Gene3D Bira Bifunctional Protein; Domain 2 133 495 IPR045864 -
Bpe14g00817 741 CDD GlyRS-like_core 132 478 IPR033731 -
Bpe14g00817 741 Pfam WHEP-TRS domain 67 103 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe14g00817 741 Pfam Anticodon binding domain 629 716 IPR004154 -
Bpe14g00817 741 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 43 740 IPR027031 -
Bpe14g00817 741 Gene3D - 627 738 IPR036621 -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 353 363 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 148 162 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 336 353 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 285 297 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 583 595 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 668 687 - -
Bpe14g00817 741 PRINTS Glycyl-tRNA synthetase signature 304 321 - -
Bpe14g00817 741 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 43 740 - -
Bpe14g00817 741 ProSiteProfiles WHEP-TRS domain profile. 61 117 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe14g00817 741 ProSitePatterns WHEP-TRS domain signature. 72 100 IPR000738 GO:0004812|GO:0005524|GO:0006418
Bpe14g00817 741 CDD WHEPGMRS_RNA 66 107 - -
Bpe14g00817 741 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 267 608 IPR006195 -
Bpe14g00817 741 TIGRFAM glyS_dimeric: glycine--tRNA ligase 130 716 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00817 K01880 GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14] - csv:101213236 1267.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00830 Bpe14g00817 CCT
Bpe13g00830 Bpe14g00817 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00830 Bpe-Chr13:14578055 Bpe14g00817 Bpe-Chr14:6185508 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1354 . . . . Bpe13g00830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00817 . . Bma06g01327 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00817 Bpe_Chr14 FPKM 0.0 0.0 2.121166 3.608038 1.227269 0.0 0.603673 0.947677 0.0 0.954908