Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00820 ATGAAGGTGGGAATGTGGGTTGCAAGTATTTTTTATGTCTATCTTTTCGCTTGGAGAATGGCCGCTGATCAGAATGTTGTTCTTACCGAGCGAATTTCAGGTGTGCTTCTAACTCTCAAGCTGCTATTTAAAATTAATTTGAAGAATTATGGGTTGAAATGTGTAGGAAGCGCTGGGGATGTGTTGGATGATGATCCTGTTGGAAGGTTGAAAGTCTACATATATGACCTTCCAAGCAAATATAACAAAAAGACACTTCAGAAAGACCTTAGATGTCTCACTCATATGTTTGCTGCTGAGATCTACATGCATAGATTCCTCTTGTCAAGTGCAGTCCGTACACTCAATCCCGACGAGGCAGACTGGTTTTATACCCCAATATATGCCACTTGTGACCTCACTCCTAATGGCTTGCCATTGCCCTTCAAATCGCCTCGAATGATGAGGAGTGCTATACAACTCATCTCTTCGAATTGGCCGTATTGGAATAGAACAGAGGGGGCCGATCATTTTTTTGTTGTTCCCCATGACTTTGGAGCCTGCTTTCATTATCAGGAGGAAAAAGCCATTGAACGTGGAATTCTTCCACTACTCCGGCAAGCAACCTTGGTTCAGACATTTGGGCAAAGAAATCACGTGTGCTTAAAAGAGGGTTCAATCACTATTCCTCCTTATTGTCCTCCCCAAAAAATGGAGGCTCACCTGATTCCCTCGGACACTCCTCGGTCAATCTTTGTCTACTTTCGCGGTCTGTTTTACGATGTTAATAATGATCCAGAAGGTGGTTATTACGCAAGAGGAGCCAGAGCAGGAGTATGGGAGAATTTCAAGAACAATCCGCTCTACGACATCTCATCTGAGCATCCTGCTACATATTACGAAGACATGCAAAGATCAATATTCTGTCTGTGCCCCCTTGGGTGGGCCCCGTGGAGTCCGAGGCTGGTGGAAGCGGTGGTGTTTGGCTGCATTCCGGTCATTATAGCAGACGACATAGTGTTGCCATTTGCCGATGCAATCCCGTGGGAAGAAATTGGAGTTTTTGTGGAAGAAGAAGATGTCCCCAAGTTAGATACAATCCTCACATCTATACCGCCTAATGTCATATTGAGGAAGCAGAGGTTGCTGGCGAATCCCACGATGAAAAGGGCAATGATGTTTCCTCAGCCAGCCCAAGCGGGAGATGCGTTTCATCAGATTCTCAATGGTCTGGCTCGTAAATTGCCGCACAAGAAGAGTATTTATGGGAAGCCAAGTGGGAAGGTTTTGAATTGGAATGCAGGGCCAGTTGGTGACATGAAACCTTGGTAA 1311 45.16 MKVGMWVASIFYVYLFAWRMAADQNVVLTERISGVLLTLKLLFKINLKNYGLKCVGSAGDVLDDDPVGRLKVYIYDLPSKYNKKTLQKDLRCLTHMFAAEIYMHRFLLSSAVRTLNPDEADWFYTPIYATCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLRQATLVQTFGQRNHVCLKEGSITIPPYCPPQKMEAHLIPSDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAGVWENFKNNPLYDISSEHPATYYEDMQRSIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVEEEDVPKLDTILTSIPPNVILRKQRLLANPTMKRAMMFPQPAQAGDAFHQILNGLARKLPHKKSIYGKPSGKVLNWNAGPVGDMKPW 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6199200 6201698 + Bpe014197.2 Bpe14g00820 115129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00820 436 Pfam Exostosin family 69 364 IPR040911 -
Bpe14g00820 436 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 49 429 IPR004263 GO:0006486|GO:0016757
Bpe14g00820 436 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED 49 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00820 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - csv:101204172 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00213 Bpe-Chr1:1320203 Bpe14g00820 Bpe-Chr14:6199200 1.11E-99 dispersed
Bpe07g00913 Bpe-Chr7:15093334 Bpe14g00820 Bpe-Chr14:6199200 0 dispersed
Bpe14g00515 Bpe-Chr14:4532123 Bpe14g00820 Bpe-Chr14:6199200 8.44E-26 dispersed
Bpe14g00820 Bpe-Chr14:6199200 Bpe02g00556 Bpe-Chr2:3596741 6.75E-31 dispersed
Bpe14g00820 Bpe-Chr14:6199200 Bpe08g00176 Bpe-Chr8:973368 2.33E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0645 Cone15ag0655 . . . Csa04g00220 . . . . . . Bpe14g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00820 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.053076 0.0 0.03681 0.0