Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00837 ATGGCGTGGAGGGGAAACCTATCTCGGAATCTGAAGGAGCTTCGTATCCTGCTTTGCCAGACTTCTCCTTCCAGCTCTGCTACCAGGGCATTCGTGGAAAATAATTACAAGGATCTAAAGTCTCTGAACCCCAAATTACCAATCTTGATACGCGAATGCAGTGGGACATCACCCCAATTATGGGCTAGATATGACATGGGTGTTGAGAGGGGTGTCCATTTGGAGGGTATGACAGAAGATCAGATCATGAAGTCGCTAGAGGAAGTAGTAAAACTTGGGGCAACTCTTAAAGCTTGA 297 46.46 MAWRGNLSRNLKELRILLCQTSPSSSATRAFVENNYKDLKSLNPKLPILIRECSGTSPQLWARYDMGVERGVHLEGMTEDQIMKSLEEVVKLGATLKA 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6289978 6292065 - Bpe014214.1 Bpe14g00837 115146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00837 98 Pfam Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain 28 78 IPR007741 -
Bpe14g00837 98 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT 1 98 IPR016464 -
Bpe14g00837 98 Gene3D Glutaredoxin 2 92 - -
Bpe14g00837 98 SMART L51_S25_CI_B8_2 20 93 IPR007741 -
Bpe14g00837 98 PANTHER BNAANNG07980D PROTEIN 1 98 - -
Bpe14g00837 98 PIRSF NDUA2 1 98 IPR016464 -
Bpe14g00837 98 SUPERFAMILY Thioredoxin-like 10 91 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00837 K03946 NDUFA2; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2 - vvi:100247134 166.777
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0632 Cone15ag0641 . . . . . . . . . . Bpe14g00837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012638 0 1 0 0 1 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 0 1 1 0 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00837 Bpe_Chr14 FPKM 51.144909 60.095497 3.956996 4.586156 12.418677 12.574551 10.120739 6.570034 6.816847 6.032285