Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00844 CAGGAAAGTTCGAGAATGTATTCTGGTCTCCACTCTCTACCGATTGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTGCCCGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACAGGGGAGCTACACGAGAGATTCGTTGACGCCGTAACTCAGCTTGGTGGCCCTGAAAAAGCAACACCTAAGACGATAATGAGAACAATGGGAGTAAAAGGTTTAACCCTCTATCACTTGAAATCGCACCTCCAGAAATACCGTTTGGGGAAGCAATCCAGCAAGGAGTTGGCCGAGAACATGAAGGATGGTATCGACCTTTGGCTCCTCTTTTATCCTCAGGTCTCTTCACATATTACTGTTTTTCTTCGTTTGAACAGTGGCTATCAGGTTACTGAAGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTGCATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTTCGCATCGAAGCACAAGGAAAATACCTGCAATCAATTCTCGAGAAAGCATGTCAAGCCTTAAACGATCAAATTGCTGCACCGGCCGGGCTTGAGGCTGCAAGAGAAGAGCTCTCCGAGCTAGAAATTAAGATTTCAACCAATTATCGAGGAATGGGTTCTCGGGACACACTCAAAATGCCGCCTTCCTTATCGGAACTGTCAGCAGCTCTTGAAAGTCAAAGTACTGTTCCCAATATTCCTTCTCGTGTGGGAGATTGCTCTGTCGAAAGTTGCTTGACATCGGCAGGAAGCCCCGTGATGGAGAAGAGACCGAGGTCCTTATTCGGAAACAGAGACTCGATGTCTGTTGACCCAAACATGCGACAAGAAATCGAATGGATGATGACAAACATCGGATGA 888 47.97 QESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTGELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDGIDLWLLFYPQVSSHITVFLRLNSGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQIAAPAGLEAAREELSELEIKISTNYRGMGSRDTLKMPPSLSELSAALESQSTVPNIPSRVGDCSVESCLTSAGSPVMEKRPRSLFGNRDSMSVDPNMRQEIEWMMTNIG 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6325672 6327964 + Bpe014220.2 Bpe14g00844 115153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00844 295 PANTHER PROTEIN PHR1-LIKE 2 6 292 - -
Bpe14g00844 295 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Bpe14g00844 295 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Bpe14g00844 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Bpe14g00844 295 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Bpe14g00844 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Bpe14g00844 295 Gene3D - 40 99 - -
Bpe14g00844 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 292 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00844 - - - mesc:110611791 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01337 Bpe-Chr4:19944011 Bpe14g00844 Bpe-Chr14:6325672 1.50E-64 dispersed
Bpe14g00844 Bpe-Chr14:6325672 Bpe15g00926 Bpe-Chr15:19025279 8.95E-69 dispersed
Bpe01g00053 Bpe-Chr1:345035 Bpe14g00844 Bpe-Chr14:6325672 3.65E-69 transposed
Bpe11g01644 Bpe-Chr11:12578540 Bpe14g00844 Bpe-Chr14:6325672 3.87E-53 transposed
Bpe13g00855 Bpe-Chr13:14754415 Bpe14g00844 Bpe-Chr14:6325672 1.60E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22485 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00844 Bpe_Chr14 FPKM 70.971527 57.54985 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0