Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00853 ATGCGCTGCCACGGCGTGGAGCTATCAGGGGGCGACTCTGCTTTCTACTGCCCCCACAACACCCCACTGTCTACAAGAAGAGCGATGGCCGAGTCGAGGTTGGGGGTTTTCCCGAAAACATTCGTTTTCTACTCGAATCCGATTCCTTTTGCGTCCTTCAGGCTCAGGACCAGGGCAACTGTCAGCGATGCGATCGTCACGGAGCCTTCGGAGTTGAGCTTCTACGAGCTTCTTGGTATATCTGAATCCGGATCTTATGGGGAAATTAAGCAGGCGTACAAGCAGCTTGCTTTGAAATATCATCCGGACGTCTCACCGGCGGATCGAGTCGAGGAGCATACCAAAAGGTTCATTCAAGTACAAGAGGCCTACGAGACCTTGTCTGACCCTAGGAGAAGAGCTTTGTATGATAGAGACATGGCTAGGGGTCTTCACCTCGCTTTCTCTGCTCGAAGGCGCCACCAACAAGACGAGGTATTCCTGTGTCTTTCGTTTGGAACTGATGACCAATCTCTTAGGGACGCGTTTTCATCTTTTGGTGATGTTGTTGATGCAAAGGTGATTACTGATAGGGAGTCGGGCAGGTCTCGGGGATTTGGGTTTGTGAACTTTTCAAATGATGAATCTGCTAGCTCTGCCATGTCTGCCATGGATGGCCAGGAGCTAAATGGGCGGAGTATTCGAGTGAGTATTGCAAATGAAAGACCAGCTGGTCCTCGTGGTGGTGGTGGTGCTTTTCGAGGTGATGGTGGCTATGGCAGTATGAATTCTGGCTTTTGA 780 50.77 MRCHGVELSGGDSAFYCPHNTPLSTRRAMAESRLGVFPKTFVFYSNPIPFASFRLRTRATVSDAIVTEPSELSFYELLGISESGSYGEIKQAYKQLALKYHPDVSPADRVEEHTKRFIQVQEAYETLSDPRRRALYDRDMARGLHLAFSARRRHQQDEVFLCLSFGTDDQSLRDAFSSFGDVVDAKVITDRESGRSRGFGFVNFSNDESASSAMSAMDGQELNGRSIRVSIANERPAGPRGGGGAFRGDGGYGSMNSGF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6375160 6380028 - Bpe014229.2 Bpe14g00853 115162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00853 259 ProSiteProfiles dnaJ domain profile. 73 140 IPR001623 -
Bpe14g00853 259 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 1 158 - -
Bpe14g00853 259 SUPERFAMILY Chaperone J-domain 71 164 IPR036869 -
Bpe14g00853 259 PRINTS DnaJ domain signature 132 151 IPR001623 -
Bpe14g00853 259 PRINTS DnaJ domain signature 112 132 IPR001623 -
Bpe14g00853 259 PRINTS DnaJ domain signature 75 93 IPR001623 -
Bpe14g00853 259 PRINTS DnaJ domain signature 93 108 IPR001623 -
Bpe14g00853 259 Gene3D - 163 259 IPR012677 -
Bpe14g00853 259 CDD DnaJ 74 129 IPR001623 -
Bpe14g00853 259 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 1 158 - -
Bpe14g00853 259 SMART rrm1_1 158 230 IPR000504 GO:0003723
Bpe14g00853 259 SMART dnaj_3 72 132 IPR001623 -
Bpe14g00853 259 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Bpe14g00853 259 SUPERFAMILY RNA-binding domain, RBD 163 255 IPR035979 GO:0003676
Bpe14g00853 259 Pfam DnaJ domain 74 137 IPR001623 -
Bpe14g00853 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 228 IPR000504 GO:0003723
Bpe14g00853 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 234 IPR000504 GO:0003723
Bpe14g00853 259 Gene3D DnaJ domain 62 162 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00853 - - - mnt:21394348 173.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00870 Bpe14g00853 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00853 Bpe-Chr14:6375160 Bpe13g00312 Bpe-Chr13:10986507 9.48E-26 dispersed
Bpe15g00820 Bpe-Chr15:18320877 Bpe14g00853 Bpe-Chr14:6375160 1.35E-16 dispersed
Bpe13g00870 Bpe-Chr13:14863010 Bpe14g00853 Bpe-Chr14:6375160 1.74E-40 transposed
Bpe13g00869 Bpe-Chr13:14859776 Bpe14g00853 Bpe-Chr14:6375160 5.09E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002087 3 2 2 2 2 2 4 2 1 1 1 1 4 2 1 4 1 3 4 2 1 2 2 2 2 2 2 3 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00853 Bpe_Chr14 FPKM 3.565339 3.983648 3.528405 2.915553 1.966451 1.703244 1.590254 3.351086 4.483366 4.700547