Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00945 ATGGAATTTGGTGGCCTTGAAAGCTTACCATCTTCGGATGCGATAGATGATGCCGAGATCCATCAACATCATCGTCAGTTTTCTTCGATTTCGAAGCCTCACACCCTCAACAACTCTAATTGTCACCTTACTGGCACCAATGTTCACGAGCTTCTTGAATGCCCCGTCTGTACTAATTCTATGTACCCTCCAATTCATCAGTGCCATAATGGGCATACCCTTTGTTCAACCTGCAAAACGAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGCGACATAAGGTGTCTGGCATTGGAAAAAGTAGCCGAATCCCTCGAATTACCTTGCAAATACTGTTCGTTGGGATGCCCAGAGATATTTCCCTACTACAACAAGCTTAAACACGAATCTGTGTGCAGTTTTAGACCCTACAACTGTCCTTATGCCGGATCCGACTGTGCTGTCTTGGGAGACATCCCTTTCCTTGTTTCTCATCTAAGAGACGATCACAAGGTCGACATGCATTCGGGCTGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCCGAGAAGTAGAAAATGCTACTTGGATGTTAACTGTATTCCACTGCTTTGGTCAATACTTCTGTCTCCATTTCGAAGCATTCCAGCTCGGGATGGCTCCGGCTTACATGGCCTTTCTCCGGTTCATGGGCAGCGAGGCAGAAGCCAGGAACTACAGCTACAGCCTGGAAGTTGGGGGAAGTGGGAGGAAACTCATCTGGGAGGGGAGCCCCAGAAGCATAAGGGACAGTCATGAGAAGGTTAGGGACAGCCACGACGGCCTGATCATTCAGCGTAATATCGCACTTTTCTTCTCCGGCGGGGACAGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGGGCAACTCCGAAGGTGGGCCTTGCATACCTATCCTATTTAGTTAG 951 49.11 MEFGGLESLPSSDAIDDAEIHQHHRQFSSISKPHTLNNSNCHLTGTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCSFRPYNCPYAGSDCAVLGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGDRKELKLRVTGRIWKEQGNSEGGPCIPILFS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7028123 7030763 + Bpe014318.1 Bpe14g00945 115254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00945 316 CDD RING-HC_SIAHs 52 90 - -
Bpe14g00945 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Bpe14g00945 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Bpe14g00945 316 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Bpe14g00945 316 SUPERFAMILY TRAF domain-like 107 299 - -
Bpe14g00945 316 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe14g00945 316 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Bpe14g00945 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 305 - -
Bpe14g00945 316 CDD Sina 168 296 - -
Bpe14g00945 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
Bpe14g00945 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 305 - -
Bpe14g00945 316 SUPERFAMILY RING/U-box 39 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00232 Bpe-Chr3:3103483 Bpe14g00945 Bpe-Chr14:7028123 0 dispersed
Bpe07g01014 Bpe-Chr7:15768477 Bpe14g00945 Bpe-Chr14:7028123 0 dispersed
Bpe14g00945 Bpe-Chr14:7028123 Bpe15g00979 Bpe-Chr15:19385499 5.65E-165 dispersed
Bpe13g00984 Bpe-Chr13:15613363 Bpe14g00945 Bpe-Chr14:7028123 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00945 K04506 - pvy:116121280 584.334