Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01046 ATGCAGCTATTGAAGGAGCTAGAAACGATGTTAGTTCTCGGAGACAAACCCCAAAAGAAAAATGTAACCGATTTGAATAATTTGGGGGATCTTACTGATGCATTTGCTACGAAGACGCCAGAGGATGAAAAGAAGATAGTAAACAAAGAGGCTCCGAATTTGGCGAAAAATGAAGCAGATTATATGAGTAGTCGCAGGAGTTCTTTGAGGATTGAAGTTGTAGACGAGACTGCTCTAATTGATTCAACTCTTGTTTCCCAAAATGGAAACAGACGAGCGCTGGCTATAATCAGTCCTACTGAACCAAAAGAGAGAAAAGGAATGGATAATACAAAAAAAAATTTGGATGTCAAGAAAAAGAAACGTTCTCGAAGAAATGGAAAGGAAAGTAAGAAGATTGTAGATTCCAATCTCAAGACTGGCTGTTTCGAAAAACTTGGTGGAATTATGAATGTTGAAGGAAGCAAGAAACTTTACTCAAGAAAGGACATGGAGGCTTTGAGGTTTACAAATGCAGCAGAGCAAAGAAAATTATGGAAAGAAATATATAATGGTTTTATGCCTTCTGTGGCAAAGGAGTATGATGACCTTGCAAGCTTTAAGAATCAGAATCCAACCGGATTAATTGTCGATCCTCCTCAGGCCTGGGTAAAGAATGTGGAGGCTCCTGCGATACTGAGGGAGCCATGTCATGCAGTTACCAATGAAGCGCTAGCAAGCATAAAGAACAAGGAAGCAAAAACTGCCGGTTACTTTGATATGTTTTCTGGCAAAGATGTTAGCCTAGAAGAAGGCTATGCTGATCCAGAACAAGAATGCGAAGAAGATGTTGATAGTGACGAAGATTATTCTAGCATTCAAAGAGTTGCCTTCATGGTGGATGGAGAACCAAATTTTGAATCGGGCCCTCCAGAAGATGGATTAGAATATCTTCGACGAGTCAGGTGGGAAGCTGCTCAGGTACCAAAAGTGAAGGTGGCTAAGGTGGATAGAAGTAAATTCAATAAAGAACAAAGTGCTTGCATGCCCCACATTCCTTGTATCCCCAAGTGCCCGGATCATTTGCTTCCTTTAAAACAGTGGGAAGATGCATTTCTTCAAGACTTTTCTGATATTCGGCTGGCGCTATCTGGTTTGGAAACCTCTCAGGCCGAGAATGCTGGCAATCCATCTCCTGAAATTATTTTTCTTGAAGATTTCATTAATGTTGCTGCAAACAAGGATGATCTCCACCAACCTCGCAATAGTTCAATCGATCATCCTGGTGATGATTCCCAGAATCTGAATCAAAACATCAAGACAAAGGAAAGATGCGAAGAATATCCAAAGTTATCTTCGATCTTGAGAATGGATTCCATAACTCGGGCGTCTATGCTGAGAAAACGGATTAGCTCAATAGAGAGTTCATGTGGTCCAACCAGGAGTGATTGTGTTTGGGTGTTTGCGCTGTGTGCCTCTGTGGATGCACCTCTGGATGCAGATGGTTCTGCTGCTCTCAGGAGTCTGCTTCGAAAATGTGCAATCTTGCGAGCAGAAAAGTCGGAGGTGGACGAGGAGATTATAATGCTGAATATTTTGGTCGCCATTTCTGGCAGGTACTTTGGTCAGTCTGAGGATTGA 1620 41.85 MQLLKELETMLVLGDKPQKKNVTDLNNLGDLTDAFATKTPEDEKKIVNKEAPNLAKNEADYMSSRRSSLRIEVVDETALIDSTLVSQNGNRRALAIISPTEPKERKGMDNTKKNLDVKKKKRSRRNGKESKKIVDSNLKTGCFEKLGGIMNVEGSKKLYSRKDMEALRFTNAAEQRKLWKEIYNGFMPSVAKEYDDLASFKNQNPTGLIVDPPQAWVKNVEAPAILREPCHAVTNEALASIKNKEAKTAGYFDMFSGKDVSLEEGYADPEQECEEDVDSDEDYSSIQRVAFMVDGEPNFESGPPEDGLEYLRRVRWEAAQVPKVKVAKVDRSKFNKEQSACMPHIPCIPKCPDHLLPLKQWEDAFLQDFSDIRLALSGLETSQAENAGNPSPEIIFLEDFINVAANKDDLHQPRNSSIDHPGDDSQNLNQNIKTKERCEEYPKLSSILRMDSITRASMLRKRISSIESSCGPTRSDCVWVFALCASVDAPLDADGSAALRSLLRKCAILRAEKSEVDEEIIMLNILVAISGRYFGQSED 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7816666 7820930 - Bpe014420.1 Bpe14g01046 115355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01046 539 PANTHER GEMIN2 159 538 - -
Bpe14g01046 539 Pfam Survival motor neuron (SMN) interacting protein 1 (SIP1) 296 537 IPR035426 GO:0000387
Bpe14g01046 539 MobiDBLite consensus disorder prediction 99 116 - -
Bpe14g01046 539 PANTHER GEM-ASSOCIATED PROTEIN 2 159 538 - -
Bpe14g01046 539 Gene3D - 355 539 - -
Bpe14g01046 539 Coils Coil 499 519 - -
Bpe14g01046 539 MobiDBLite consensus disorder prediction 99 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01046 K13130 GEMIN2, SIP1; gem associated protein 2 - qsu:112010499 412.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1139 . . . . . Bpe14g01046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008566 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01046 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.042542 0.764255 0.320859 0.604122 4.172186 8.537983 3.901965