Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01051 ATGGATTTGGACCCAGATGAGATTTTCAGAGACGATGAAGATGATCCTGACCAGTTGTTCTACCAAGGAAGGGAGCAAACAAAAGGATTTGTGGTTTACTTGGTGGATGCTTCCCCCAAGATGTTCAATTCTTCTTGTCGCTCTGGTGATGGAACTGAGGAAACTCATTTCCAAATTGCTGCAAGTTGTATCTCACAGTCGTTGAAGACTCAAATAATAAACAGATCCCATGATGAAGTGGCAATATGTTTTTTTAACACAAAGGAAAAGAAAAATTTACAAGATTTAAGTGGTGTTTATGTATTCAATGTTGCTGAACGAGAAGAACTGGACCGGCCAACTGCAAAGCTCATAAAATCTGTTGATTGTTTAGAAGATTTATTTATGAAAGATATTGGGAGTCAATATGGTATCATGTCTGGGTCCCGAGAAAATTCTCTCTACAATGCAATATGGGTAGCTCAAGCACTGCTGCGCAAAGGATCAGCGAAAGTAGCCGACAAGCGGATCCTTCTGTTTACAAATGAAGATGATCCTTTTGGTAGTATCAAAGGAGCAACAAAATTTGATATGATGAGAACTACATTACAAAGAGCAAAAGATGCTCAAGATCTAGGCATCTCAATTGAACTTCTCCCATTGAGTCAACCTGATGAAAAGTTTAATGTTTCTCTTTTTTATGCTGATTTATTAGGACTAGAAGGCAGTGATCTTGCTCAATTTATGCCTTCATCACAAGAGAAGCTGGAAGATATGAAAGACCAATTGAGGAAACGAATGTTTAGCAAACGCATAATAAAAAGAATAAAATTTTCCATAGCCAATGGATTGTCTATTGGATTGAATTCTTACGCTTTGATACGTCCTACTCCTCCAGGAGCAATCACCTGGCTAGATTCGGTCACCAATCGTCCTTTAAAGGTTGTGCAGACAGAGAGATCTTTCATCTGTGCAGATACAGGTGCATTGGTACAAGAACCTTTGAAGCGCTTTCAGTTTTATAAAAATAAGATTATCAAGTTTTCGGCCGAGGAACTTTTTGAAATAAAGAGCGTTGCAAGTGGACATCTTTGCCTTTTGGGTTTCAAGCCATTAAGTTGCCTTAAAGATTATCACAATTTGAAGCCATCTACTTTCTTATTTCCGAGTGACGAGGAAGTGGTTGGAAGTACTTGCATGTTCATTGCCCTGCATAGATCCATGCTGCGGCTTAAGCGTTTCGCAGTTGCATTCTATGGCAGTTCATCTCATCCTCAGTTGGTTGCCCTTGTTGCACAAGATGAAGTTACTTCAACTTGTGGTCAGATTGAACCCCCAGGAATACATATGATATATCTACCATATGCTGATGACATTCGACATCTTCATCCTGATTCACCTCGAGCAACTGATGATCAAATCAAAAAGGCTGCTGCTCTGATAAAACATATCGATTTGAAAGACTTTTCTATTTGCCAATTTTCTAATCCGGCCTTGCAGAGACACTATGCAATATTGCAGGCCCTTGCTCTAGAAGAGGATGAGATGCCAGATATGAAAGACGAGACAGCTCCAGATGAAGAAGGCATGGCCAGACCTAGAGTGACCAATGCCTTGGAGGAATTCAAGCTCTCTGTGTATGGAGAGAATTATGTTCACGGGAGTGATGAAACAGGAAAAGAAAGCGAGATCTCGAAAAAGAGAAAAACAATTGCAGAGAATGCTGTTCAGAAGTCTCAAGAGTATGATTGGGGAAGCCTTGCAGACAGTGGAAAGTTAAATAATCTATCAGTTGTGGAACTCAAGTATTACTTGACGGCACAAGGTCTTCCAGTTTCTGGGAAGAAAGAAGTGTTGATAAGCCGGATACTTTCCCACATGAGAAAGTAA 1869 40.02 MDLDPDEIFRDDEDDPDQLFYQGREQTKGFVVYLVDASPKMFNSSCRSGDGTEETHFQIAASCISQSLKTQIINRSHDEVAICFFNTKEKKNLQDLSGVYVFNVAEREELDRPTAKLIKSVDCLEDLFMKDIGSQYGIMSGSRENSLYNAIWVAQALLRKGSAKVADKRILLFTNEDDPFGSIKGATKFDMMRTTLQRAKDAQDLGISIELLPLSQPDEKFNVSLFYADLLGLEGSDLAQFMPSSQEKLEDMKDQLRKRMFSKRIIKRIKFSIANGLSIGLNSYALIRPTPPGAITWLDSVTNRPLKVVQTERSFICADTGALVQEPLKRFQFYKNKIIKFSAEELFEIKSVASGHLCLLGFKPLSCLKDYHNLKPSTFLFPSDEEVVGSTCMFIALHRSMLRLKRFAVAFYGSSSHPQLVALVAQDEVTSTCGQIEPPGIHMIYLPYADDIRHLHPDSPRATDDQIKKAAALIKHIDLKDFSICQFSNPALQRHYAILQALALEEDEMPDMKDETAPDEEGMARPRVTNALEEFKLSVYGENYVHGSDETGKESEISKKRKTIAENAVQKSQEYDWGSLADSGKLNNLSVVELKYYLTAQGLPVSGKKEVLISRILSHMRK 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7862975 7877454 - Bpe014425.3 Bpe14g01051 115360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01051 622 CDD vWA_ku 28 259 - -
Bpe14g01051 622 TIGRFAM ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70) 28 620 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bpe14g01051 622 CDD KU70 264 536 - -
Bpe14g01051 622 Pfam Ku70/Ku80 N-terminal alpha/beta domain 30 265 IPR005161 -
Bpe14g01051 622 Gene3D - 264 448 IPR016194 -
Bpe14g01051 622 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6 2 621 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bpe14g01051 622 SMART ku_4 320 464 IPR006164 GO:0003677|GO:0006303
Bpe14g01051 622 SUPERFAMILY vWA-like 28 262 IPR036465 -
Bpe14g01051 622 Pfam Ku70/Ku80 beta-barrel domain 273 468 IPR006164 GO:0003677|GO:0006303
Bpe14g01051 622 Gene3D SAP domain 564 622 IPR036361 -
Bpe14g01051 622 Gene3D von Willebrand factor, type A domain 28 260 IPR036465 -
Bpe14g01051 622 PANTHER KU AUTOANTIGEN DNA HELICASE 2 621 - -
Bpe14g01051 622 Pfam SAP domain 586 619 IPR003034 -
Bpe14g01051 622 SMART sap_9 586 620 IPR003034 -
Bpe14g01051 622 SUPERFAMILY SPOC domain-like 264 542 IPR016194 -
Bpe14g01051 622 PIRSF Ku70 2 622 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bpe14g01051 622 Pfam Ku70/Ku80 C-terminal arm 481 562 IPR005160 GO:0003677|GO:0003678|GO:0006303
Bpe14g01051 622 ProSiteProfiles SAP motif profile. 586 620 IPR003034 -
Bpe14g01051 622 Gene3D - 449 543 - -
Bpe14g01051 622 Gene3D Ku70, bridge and pillars 289 353 IPR027388 -
Bpe14g01051 622 SUPERFAMILY SAP domain 574 621 IPR036361 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01051 K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1 - qsu:111994183 937.562
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1094 . . . . . Bpe14g01051 . . . . . . . . . . . Bhi01g02623 . . . . . Lcy11g1238 . . . . . . . . . Cone18ag0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010821 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01051 Bpe_Chr14 FPKM 4.254926 4.070311 6.684798 7.907221 5.315084 3.644767 5.618228 9.955559 10.092616 12.397951