Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01055 ATGATTTTATGGAATGAAGTTACTCTTATTGCAGTGGATTTTGTAGTTGATGGCAACTTAAATGCTGAGGGGGTAGGGAGTTCTGTGGCTAACGATAGTATTAAACCAGTTGATGAAAATGGAACGGGTGTAAGTTCTATTGAAGGTACATTCCAGCACGATATAGATGAAAAGTTTATTCATGATTCTTCTGGGAGGGATATAATTTCAGAGTCACTTGAAGTAGTGTCAATGGCAGATGAGCCCTTTGCAGGCCAGGAATTTGAATCTGAAGCAGCAGCGCATGCATTTTATAACTCTTATGCATCACGTTTGGGATTTATCATACGTGTGAGCAAGCTCTCACGATCTAGACGTGATGGATCTGCTATTGGTCGTGCACTAGTTTGTAACAAAGAGGGTTATAGGATGCCTGACAGGCGTGAGAAGATTGTGAGGCAGAGAGCAGAGACCAGAGTTGGATGTAGGGCAATGATTTTGGTGAGAAAAGTTAGTTCTGGTAAATGGGTTATTACAAAGTTTGTTAAGGAACATACACATCCAATGACACTTGTAAAAGCACGGAGAGATTGCATTTACGATCAATATCCGTTTTATAATTCAACAATTTTTGTGTTGGACATGCAGAACGAGCACGATAAGATTCGACAACTTTCTCAGCAGCTGACCATGGAGAAAAAACGAGCTGCGACGTATAAAAGACATTTAGACCTGATATTTGAGCACATTGACGAGCATAACAAGAGCTTATCGAAGAAGATTCAACACATTGTAGACAGTGTGAAGGACATGGAAGCAAAAGATCAGCAGAATCATAGATAA 822 40.02 MILWNEVTLIAVDFVVDGNLNAEGVGSSVANDSIKPVDENGTGVSSIEGTFQHDIDEKFIHDSSGRDIISESLEVVSMADEPFAGQEFESEAAAHAFYNSYASRLGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDRREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFVKEHTHPMTLVKARRDCIYDQYPFYNSTIFVLDMQNEHDKIRQLSQQLTMEKKRAATYKRHLDLIFEHIDEHNKSLSKKIQHIVDSVKDMEAKDQQNHR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7901769 7907124 - Bpe014429.1 Bpe14g01055 115364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01055 273 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Bpe14g01055 273 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 10 271 - -
Bpe14g01055 273 Coils Coil 208 228 - -
Bpe14g01055 273 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01055 - - - zju:107422100 379.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00531 Bpe-Chr4:3368234 Bpe14g01055 Bpe-Chr14:7901769 1.58E-15 dispersed
Bpe04g00815 Bpe-Chr4:5384751 Bpe14g01055 Bpe-Chr14:7901769 3.44E-39 dispersed
Bpe11g00965 Bpe-Chr11:7179822 Bpe14g01055 Bpe-Chr14:7901769 1.28E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1236 . . . . . Bpe14g01055 . . . . Cma06g01737 . . . Sed02g0957 . . Bhi01g03729 Tan10g1382 Cmetu07g1340 . Hepe05g1091 . Lcy11g0995 . . . . . . . . . . . . . . Cme07g01976 . Blo07g00110 Bda11g00474 . . . . Bma06g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007556 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22504 PF03101 FAR1 4.00E-29 CL0274 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01055 Bpe_Chr14 FPKM 1.638379 2.263988 45.019184 44.676414 6.980003 6.446404 7.641496 5.253666 4.250054 4.761177