Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01059 ATGCTCTCAAACTTCGGACTCTCTACAATCTCTTTTTACATGGAGAAGAAGATAGTTCTCAAAGATGACTCGGTTTTACACCACCCGTATCTCCTTCACCCGTATCTCCTTCTTCTTGTTCTGGCTCTCGGGTTTATCATAATGGACCCGTTGCAAATGGGTCCACTAGGAGGCCATGATTTCAAACCTGTGAAGAACGACATTGCGCCGTACAAGCAAGTGATGGAGAGATGGCCGAGGGACAACCTTAGTAGCCTTGGGCGTGGAAAGTTGGAGTTCGAAGACCAAGTGTTTGGTCCTGAATCCCTGGAGTTTGATAGCTTTGGAAATGGCCCTTATACTGGCCTTGCTGATGGACGCATTGTTCGATGGATGGGCCCAGACGTAGGGTGGGAGACCTTTGCATATGTCTCCGTTAATTGGTCGGAGAAGGAGTGCGGGAGAGGGGTGAATTCGACAACGGCGAAGCAATGGAAGCATGAAAGGAAGTGTGGAAGACCATTGGGGGTGAGGTTTGACAAGAAGAGGGGAGATTTGTACATAGCAGATGCATATTATGGGTTGCTTGTGGTGGGTCCTCAAGGAGGATTAGCCCAGCCTTTGGCCACCCATGTTGATGCCTCTCCCATTCTCTTTGCTAACGACCTCGACATTCATTCTAATGGCTCTGTTTTCTTCACTGACACTAGCAACAGATACAACAGAGTGAATCATTTCTTCATTTTGTTGGAAGGAGAGGCCACTGGAAGGCTTCTTAGGTATGACCCTCCTACCAAAACAACTCATCTTGTTTTGGGCGGATTGGCATTTCCAAATGGAGTTCAAATTTCCAAGGACCAAACCTTTCTACTCTTCACTGAAACAACCAATTGCAGGATAATGAAACTTTGGCTGGACGGTCCAAGACGAGGAAACATTGAAGTCCATGCAGATTTGCCTGGTTTTCCGGACAACATAAGAATGAACAAGAAAGGAGAGTACTGGGTAGCCATAGATTGTTGCCGGACCCGAGCCCAAGAGATTCTGACAAACAATCCATGGATGAGAAGCTTTTATTTTAGACTGCCATTGAGGATGAGCTTCTTAGCTCGGATGATGGGGATGAAGATGTACACAGTGATAGCTCGGTTGAACGAGGAGGGAGAGATTCTGCAAGTGTTGGAGGACAGGGATGGGGAGGTGATGAAGTTGGTGAGTGAAGTTAGAGAAGTGGATGGAAAGCTATGGATTGGGACTGTTGCTCATAACCATGTTGCCACCTTGTCTTACCCTTGA 1275 47.06 MLSNFGLSTISFYMEKKIVLKDDSVLHHPYLLHPYLLLLVLALGFIIMDPLQMGPLGGHDFKPVKNDIAPYKQVMERWPRDNLSSLGRGKLEFEDQVFGPESLEFDSFGNGPYTGLADGRIVRWMGPDVGWETFAYVSVNWSEKECGRGVNSTTAKQWKHERKCGRPLGVRFDKKRGDLYIADAYYGLLVVGPQGGLAQPLATHVDASPILFANDLDIHSNGSVFFTDTSNRYNRVNHFFILLEGEATGRLLRYDPPTKTTHLVLGGLAFPNGVQISKDQTFLLFTETTNCRIMKLWLDGPRRGNIEVHADLPGFPDNIRMNKKGEYWVAIDCCRTRAQEILTNNPWMRSFYFRLPLRMSFLARMMGMKMYTVIARLNEEGEILQVLEDRDGEVMKLVSEVREVDGKLWIGTVAHNHVATLSYP 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7927690 7929261 + Bpe014433.1 Bpe14g01059 115368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01059 424 Gene3D - 84 424 IPR011042 -
Bpe14g01059 424 Pfam Strictosidine synthase-like, N-terminal 97 124 - -
Bpe14g01059 424 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 30 424 - -
Bpe14g01059 424 Pfam Strictosidine synthase 214 300 IPR018119 GO:0009058|GO:0016844
Bpe14g01059 424 SUPERFAMILY Calcium-dependent phosphotriesterase 90 420 - -
Bpe14g01059 424 PANTHER STRICTOSIDINE SYNTHASE-RELATED 30 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01059 - - - pvy:116135404 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00886 Bpe-Chr11:6531910 Bpe14g01059 Bpe-Chr14:7927690 2.35E-101 dispersed
Bpe13g01315 Bpe-Chr13:18278764 Bpe14g01059 Bpe-Chr14:7927690 2.45E-77 dispersed
Bpe14g01059 Bpe-Chr14:7927690 Bpe15g00494 Bpe-Chr15:16186599 1.28E-37 dispersed
Bpe14g01059 Bpe-Chr14:7927690 Bpe08g00231 Bpe-Chr8:1312224 2.18E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01059 Bpe_Chr14 FPKM 2.4296 2.399749 0.0 0.348149 0.0 0.0 0.0 0.0 0.0 0.0