Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01069 ATGGAACACCCCTCTTCATCTAAGGAAAAAGGTATGGGTCATTGGGAAACTTCAAGGGGACAATTGGAAAGCTTCATGCCACTGAATGGGGGCATGGGGAATCTCAGCTTTGAGGATATCTATGGCAACTTTGCCAACCTATCGACTCTTGATGCTACTGCTGGATGGTGCTACAGTTCAGCTGCAGATCCTATTTTTCCTTCTGGGTTGTCTTTGGTTCCATCAATGCCTTGTACATCTTTGGATCCTTCAAATTTTTTGGAAGATAATAGCGAGGCATTCTCCATGAATGAAATCAGTGGTGTTACCAATTCCATGGGGAGTTCGTTCAATTCTGGGGACAGTGGTCTGTTTCATCAACTGGAATCTATATTCAGATTTGCAATAGATTCAAGTGATGTAAATGAGTCGGAATCTAAACAAAATAATGTTATGGACACTGGTAGTTATATTATCTCTAGGCCTTTTGGATGGTCCCTTGACGAAAGAATGCTTAGGGCATTGGCCTTATTCAAGGAATCTTCTGGTGAGGGTATTTTGGCTCAAGTATGGGTTCCTATGAAGCATGGGAATCAGTATGTTTTGACAACTAGTGAGCAACCTTATTTACTCGATCAAATGCTGACGGGGTTTCGTGAAGTTTCTAGAATGTTCACATTTTCTACAGAAGAGAAACCAGGTGCAGTCCTTGGTCTTCCTGGTCGGGTGTTTGCTTCTAAAATTCCAGAGTGGACTTCTAATGTTAGTTACTACAAAAAGGGAGAATATCTCCGTGTGGAGCATGCTCTTGGCCATGATGTTCGAGGATCAATTGCATTACCAGTTTCCTATTTCCAATCCGAAATGTCATGTTGTGCGGTACTTGAACTTGTGACTAATAAAGAAAAACCCAATTTTGACATGGAAATGGAAGTAGTCTGTCAAGCACTCCAGGCCGTTAATTTGAGGACAACTCCGCCACCACGACTTCTCCCCCATAGCTTTACAAATAATCAGAAATCTGCGTTGGCTGAAATAACCGATGTCCTACGGGCCGTATGCCATGCACATGGACTGCCTCTAGCGCTTACATGGATACCTTGCTGTTATACCATGGGAGTGGATGATGGATCTATGAGAGTCCGTGTTAGAAATAGTACTATCGGACCCCACGAAAAATGTATCATATGCATTGAAGAAACAGCTTGTTATGTAAATGATAAAACCGTGCAAGATTTTTTGAATGTCTGCGCCAACCATTATCTAGAGGAAGGACAAGGGATTGTTGGGAAAGCCCTTCAGTCGAATCATCCCTTTTTTAATCCTGATGTGCAGGCTTATGATATAAATGCATATCCACTTGTCCATCATGTTCGGAAGTTTGGTTTGAATGCTGCAGTTGCAATCCGGCTCAGAAGCACTTATACGGGTGTTGATGACTATATTTTAGAGTTGTTTTTACCTGTTAATATGACGGGGAGTACGGAACAGCAACTCCTGTTGGACAGCCTCTCTGGGACCATGCAGAGGATATGTAGAAGCTTGAGGACTGTTTCGAATGTAGACTTCGTATGCTCTGAGTATCCTAAAGTTGAATTTCAGGACGAGGCAGTTCAAAAGTTCACTCCTATTTCTTTTAGAATTTCGAAATCGAGAACATCAGATACCTTGAGTGCAAAGGAGAAACTGAAGTTGTCGAAGTTGGCCAATGATGAAGTTGAAACAAACTGGCCTTCTGACCTGACAACTAGTCGATCCCGGAGACCATCGGAGAAGAAACGAAGTACAGCTGAGAAAAATGTCAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGAAGTCTTAAGGATGCTGCGAAAAATATTGGCGTTTGTCCCACTACCTTAAAGAGGATATGCAGACAACATGGGATTTTGAGATGGCCATCGCGGAAAATCAACAAGGTGAACCGATCCTTGAGAAAAATACAAACGGTGCTTGATTCTGTTAAGGGGGTGGAGGGAGGATTGAAGTTTGATCCATCTACTGGGGGTTTTATTGCCACTGGCACTCCGATGGAAGAATTTAACGGGCAAAGTAGTTTTCTTTTGCCTGAGAAAAAGCCGTGTTGTAGAGAAGCACCAGCCTTTAACAATCCAGTTTCAGTCCCTCCAGCGTGTTTTAATGGTCACAGTTCTTCGATTAAGTTGGAAGATGACGAGTTTCTTATGGCTGGAGACGACATAATACCGTCGATAAGTATTCCGGAAAGGACATCTGACATTCTGCAAGTGGACCTTAGCGGCGACTCCAAGAAAATAGGACCTTTTAACCTGAATTCGGATTTTTGGTGGACTTGTTTGAAATTAGACAAGTCTAATTCACACTTTGAATTTCAGAGCTCGAGCTCATTGGCTGCTGATGAGATGGACACTGGAGGGGAAGCTGATGATGGAGTAGTAGAGCACAACCACCATCTTTCTTCAAGCACGGGGGACTCGTCAAGTGGATCTCGTACCCTCCTTCATGGCAGTTCATCGGGCTCTCAAAGCTTTGATGACCAGAAGTATCCGAAAGACAAAATAAGCTGCATCGACAGTGGATCAAAGATCACCATCAAAGCTTCATACGGAGAAGATATGATTCGATTCAAATTCGATCCATCTTGGGGTTATTTTCAACTCAATGAAGAAGTGGCCAAGAGGTTTAAATTGCCCAGCGGGTCGTTCGAACTCAAGTATCTAGACGACGAAAAAGAGTGGGTAATGCTAGCTTGCGATTCGGATTTGCAAGAGTGTCTCGAGCTGATGGAAGATTCCGGGGCAAGAACTGTGAAGTTCCTCGTCCGGGATAGGCCTTTTGCGGTGAGCAGTTCAGCCGGCAGCTGCTGCTTTCTCGCTGGAGATTGA 2865 43.56 MEHPSSSKEKGMGHWETSRGQLESFMPLNGGMGNLSFEDIYGNFANLSTLDATAGWCYSSAADPIFPSGLSLVPSMPCTSLDPSNFLEDNSEAFSMNEISGVTNSMGSSFNSGDSGLFHQLESIFRFAIDSSDVNESESKQNNVMDTGSYIISRPFGWSLDERMLRALALFKESSGEGILAQVWVPMKHGNQYVLTTSEQPYLLDQMLTGFREVSRMFTFSTEEKPGAVLGLPGRVFASKIPEWTSNVSYYKKGEYLRVEHALGHDVRGSIALPVSYFQSEMSCCAVLELVTNKEKPNFDMEMEVVCQALQAVNLRTTPPPRLLPHSFTNNQKSALAEITDVLRAVCHAHGLPLALTWIPCCYTMGVDDGSMRVRVRNSTIGPHEKCIICIEETACYVNDKTVQDFLNVCANHYLEEGQGIVGKALQSNHPFFNPDVQAYDINAYPLVHHVRKFGLNAAVAIRLRSTYTGVDDYILELFLPVNMTGSTEQQLLLDSLSGTMQRICRSLRTVSNVDFVCSEYPKVEFQDEAVQKFTPISFRISKSRTSDTLSAKEKLKLSKLANDEVETNWPSDLTTSRSRRPSEKKRSTAEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVLDSVKGVEGGLKFDPSTGGFIATGTPMEEFNGQSSFLLPEKKPCCREAPAFNNPVSVPPACFNGHSSSIKLEDDEFLMAGDDIIPSISIPERTSDILQVDLSGDSKKIGPFNLNSDFWWTCLKLDKSNSHFEFQSSSSLAADEMDTGGEADDGVVEHNHHLSSSTGDSSSGSRTLLHGSSSGSQSFDDQKYPKDKISCIDSGSKITIKASYGEDMIRFKFDPSWGYFQLNEEVAKRFKLPSGSFELKYLDDEKEWVMLACDSDLQECLELMEDSGARTVKFLVRDRPFAVSSSAGSCCFLAGD 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8022055 8027595 + Bpe014443.1 Bpe14g01069 115378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01069 954 PANTHER PROTEIN NLP8 7 948 IPR045012 GO:0003700
Bpe14g01069 954 ProSiteProfiles PB1 domain profile. 855 937 IPR000270 GO:0005515
Bpe14g01069 954 Pfam RWP-RK domain 593 641 IPR003035 -
Bpe14g01069 954 Pfam PB1 domain 856 936 IPR000270 GO:0005515
Bpe14g01069 954 MobiDBLite consensus disorder prediction 570 592 - -
Bpe14g01069 954 SUPERFAMILY CAD & PB1 domains 849 936 - -
Bpe14g01069 954 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 948 - -
Bpe14g01069 954 SMART PB1_new 855 937 IPR000270 GO:0005515
Bpe14g01069 954 MobiDBLite consensus disorder prediction 810 838 - -
Bpe14g01069 954 CDD PB1_NLP 856 936 IPR034891 -
Bpe14g01069 954 MobiDBLite consensus disorder prediction 793 841 - -
Bpe14g01069 954 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Bpe14g01069 954 Gene3D - 852 935 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01069 - - - tcc:18602418 1026.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00057 Bpe-Chr7:462325 Bpe14g01069 Bpe-Chr14:8022055 1.10E-21 dispersed
Bpe13g00230 Bpe-Chr13:10307323 Bpe14g01069 Bpe-Chr14:8022055 3.10E-07 dispersed
Bpe14g01069 Bpe-Chr14:8022055 Bpe15g00652 Bpe-Chr15:17274009 2.00E-08 dispersed
Bpe13g00719 Bpe-Chr13:13729421 Bpe14g01069 Bpe-Chr14:8022055 7.97E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00708 BCT 194 987 NLP Transcription Factor Family AT1G64530 51.4 5.6e-212 734.2
Bpe07g00057 BCT 191 968 NLP Transcription Factor Family AT1G64530 51.3 8.1e-211 730.3
Bpe07g00057 BCT 270 968 NLP Transcription Factor Family AT4G24020 53.6 1.7e-197 686.0
Bpe05g00708 BCT 273 987 NLP Transcription Factor Family AT4G24020 53.0 2.8e-195 678.7
Bpe14g01069 . 152 951 NLP Transcription Factor Family AT3G59580 52.3 2.0e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22506 PF00564 PB1 2.40E-16 CL0072 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01069 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0