Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01077 ATGACTGATAATTTTAGCGACAAGTCTATGATTGGTGAGGGATCATATGGAAGCATATATTGTGGTGTTCTTAAAAGTGGGCAGACTGCAGCCATAAAAAAATTGGAGTCTAGCAGGCAACCAGAACAAGAATTTCTAGCTCAGGTGTCCATGGTGTCTAGACTAGAAAATGAAAATGTTGTAAAGCTTGTTGGCTATTGTAATGGTGGGCCAATCCGCGCCCTTGCTTATGAGTATGCTTCGCATGGGTCTCTTCACGATATTCTTCATGGAAAGAAAGGAGTCAAAGGAGCACAACCCGGCCCCGTTCTGTTGTGGACTCAAAGAGAAAAAATTGCATTAGGAGCTGCAAAAGGACTAGAATACCTGCACGAGCGGGCACAACCTCAAATAATTCATCGTGATATTAAGTCGAGTAATATTCTTGTTTTTGACGACGACGAAGCTAAGATTGCTGATTTTGATCTGTCAAATCAAGCTCCGGATAATGCAGCCCGGCTTCATTCAACTCGTGTCCTCGGGACGTTCGGTTATCATGCTCCTGAATATGCAATGACTGGGCAACTGAGCACGAAAAGTGATGTTTACAGCTTCGGTGTCATTCTTCTTGAGCTCTTGACCGGTCGTAAGCCTGTTGATCATACACTTCCTCGTGGTCAACAAAGCCTCGTTACATGGGCGACACCAAAACTCGTCGAAGATAAGGTTAAACATTGTGTCGATGCTCGGCTCATGGAGAATTACCCCCCCAAGTCTGTGGCCAAGTTTGCTTCTGTTGCTGCCCTGTGTGTGCAATATGAAGCCAATCTCCGGCCAAGTATGAACATTGTCGTGAAAGCACTCGAACCTTTATTGAACACTCGTCCTGCTCCTCAATCAAGACGTCCATAG 891 45.12 MTDNFSDKSMIGEGSYGSIYCGVLKSGQTAAIKKLESSRQPEQEFLAQVSMVSRLENENVVKLVGYCNGGPIRALAYEYASHGSLHDILHGKKGVKGAQPGPVLLWTQREKIALGAAKGLEYLHERAQPQIIHRDIKSSNILVFDDDEAKIADFDLSNQAPDNAARLHSTRVLGTFGYHAPEYAMTGQLSTKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLVEDKVKHCVDARLMENYPPKSVAKFASVAALCVQYEANLRPSMNIVVKALEPLLNTRPAPQSRRP 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8064746 8066501 - Bpe014451.1 Bpe14g01077 115386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01077 296 ProSiteProfiles Protein kinase domain profile. 5 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g01077 296 SMART serkin_6 5 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g01077 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Bpe14g01077 296 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Bpe14g01077 296 SUPERFAMILY Protein kinase-like (PK-like) 2 281 IPR011009 -
Bpe14g01077 296 CDD STKc_IRAK 11 284 - -
Bpe14g01077 296 PIRSF ILK 1 293 - -
Bpe14g01077 296 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Bpe14g01077 296 Gene3D Transferase(Phosphotransferase) domain 1 81 293 - -
Bpe14g01077 296 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 290 - -
Bpe14g01077 296 Pfam Protein tyrosine and serine/threonine kinase 9 281 IPR001245 GO:0004672|GO:0006468
Bpe14g01077 296 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01077 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - han:110941169 491.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00731 Bpe14g01077 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01448 Bpe-Chr4:21129184 Bpe14g01077 Bpe-Chr14:8064746 4.27E-56 dispersed
Bpe13g00731 Bpe-Chr13:13876432 Bpe14g01077 Bpe-Chr14:8064746 4.29E-156 dispersed
Bpe14g01077 Bpe-Chr14:8064746 Bpe03g00490 Bpe-Chr3:24626403 1.05E-86 dispersed
Bpe06g00604 Bpe-Chr6:16880210 Bpe14g01077 Bpe-Chr14:8064746 1.70E-161 transposed
Bpe13g00714 Bpe-Chr13:13690340 Bpe14g01077 Bpe-Chr14:8064746 2.16E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g252 . . . . . Bpe14g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00096 Bda11g00468 . . Bpe13g00731 Bma02g00954 Bma06g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63734 PF07714 PK_Tyr_Ser-Thr 1.20E-43 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01077 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.055203