Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01079 ATGGCTGAGCCTACATCCGCTGCCCTAGGTCCGCGCTATGCACCTGATGATCCTACTCTTCCTAAGCCTTGGAAGGGTTTAATTGATGGAAGCACAGGTCTGTCATACTATTGGAACCCTGAAACAAACGTCACCCAGTATGAAAAGCCAGTAGCCACAACACCCCCTATGCCACTTGCTCCAATTCCAGGGGGACATTCAGTGCCATCTAATGGTGTTACGGCTCAGATTGGGCAGCAAATCTCACAAGGTTCTCAACACGAAGGTCAGCAAATGAGTCATTTATCTAAGCAGCCATACCCAGTGGCACAGCAACAGAGTTCTATGGCGGTGCAGGTGTCACACCAGGAAGGGTTGCAAATTACCCAAGCATTACAACATCATGGCCTGCATTCAAGTCAGGCCATGCACCAGCCGGGGCAATTACAGCAACATAAGCAACCCATGATGCAATATCAGGGCCAACAAATGTTACAAAACACAAATCAGCATATGTCTCAGCCGCCAAATCTGCAAGCTCTACAACATCCTGGGCAAATAATTTCACAACAATCAGCCCCTCAAATTCCCCACAAGATTTCCCCTAGTCAAGGTTTACCAATGGGACAACATCAAGGGCAGTATGCACATCAACAATTTCAATACATGGCCTATCAGCGCAATGTGGTACCTAAAATTCAGCAAAATTTGCAGCAGCAGGTCCATCATAATGTCCAAGGGCAATCGTTTGGAAATCAACAAGAGTATATGACTACGAACTCAAAGAAGGAGGAAGATGATTTTCATCATGGAAACCAAGTGGTATTTTCGCCTTCCCAGTTCCAGCAAACTAGCATCTCATCTGCCAACAACGTTCATGCTGGAACGAATTCAATTCCCATGCAAAAGTTTGGTGCTCCATCAGGTCAAGCCCCAAAATTTGGTATTCCACCAGCTGGTGTGCAGCAGACACCTCCAATGGCTCAGTTACAGGCAACTGGTTTGGATTTTAGGCCCCAACCTCTTCCAAACTTTCAGAATCAGATGAATCCTGCTTTAATGCACGGCCAGCAGGCTGGTGTACCTCCTAATGACATAAAAATGGAAAACGAAGAAAATATGTCTGGAAGAGTTGGAAATGAATATTATGCCAGCGGTAACAAGGATGCGCCTGCTGTTTCTATGCAGCAACCAAAGCTTGCAACCATACCAATGGGAAGGAGTCATCAGGAGATGAGAATGAGTGGAGTTCCGTTTCAAAATACGATGCCTGGTCAATCCAGTGGTTTGAATGCTGTAGCTGGATATTCCTTGCAGAATGTTTACAGTCAGGGTATGGGTGGTCAACCATTACCGAATAACTCTCAAATGAGGCTTCCTATGGGATCTTCAGATGTTACAATTATGTCGCCTGTTGAAAATTACTGCAAACAACATGAAGTTACTACAACGGGTGATAATGTTCCAGCACCATTTATAACATTTGAAGCTACTGGTTTCCCTCCAGAAATATTGAAAGAAATCTATTCTGCTGGTTTCTCCTCTCCAACACCGATTCAGGCACAAACATGGCCAATTGCCCTACAAGGTCGAGATATTTTAGCAATTGCTAAAACAGGATCAGGGAAAACATTGGGCTATTTGATTCCTGCCTTTATTCTTCTAAGGCAACGCCATAATAATCCTCAAAATGGACCAACAGTGCTAGTACTGTCTCCTACTCGGGAGCTTGCCACACAAATACAAGATGAGGCCATCAAGTTTGGTCGATCTTCAAGGGTCTCTTGCACTTGCTTGTATGGTGGAGCTCCAAAGGGTCCTCAGCTAAAAGAATTAGACAGAGGTGCAGATATTGTGGTGGCAACTCCTGGTAGGCTCAATGACATTCTTGAAATGAAAATGATAAATTTTAGACAAATTTCTCTGCTTGTGCTTGACGAAGCAGATCGCATGCTTGACATGGGGTTTGAACCTCAAATTCGTAAAATTGTGAATGAGATACCCCCTCGTAGGCAAACACTTATGTATACAGCAACCTGGCCAAAAGAAGTTAGGAAAATAGCGGGTGATCTTCTCGTCAATCCTGTCCAGGTTAATATTGGCAGTGTCGATGAGCTTGCTGCAAACAAGGCTATCACACAGTATGTTGAAATGGTTCCACAGATGGAAAAGCAGAATCGCTTGGAGCAGATCCTACGATCTCAGGAACGAGGCTCCAAGGTTATTATTTTCTGTTCCACGAAAAGATTGTGTGATCATCTTGCACGAAGCCTTGGACGCGGATTTGGAGCTGCTGCTATTCATGGAGACAAGTCTCAGGGGGAGAGAGACTGGGTATTAAATCAGTTCCGCAATGGAAAATCTCCCATATTAGTTGCTACTGACGTAGCTGCCCGTGGTCTTGATATCAAGGATATCAGAGTAGTGATCAACTATGACTTTCCCACTGGAATTGAGGACTATGTTCACCGAATTGGAAGAACTGGACGAGCTGGTGCTACAGGAGTGTCTTATACCTTTTTCTCTGACCAAGACTGGAAATATGCCGCTGACTTAATTAAAGTACTTGAAGGGGCTAACCAACAAGTGCCTCCAGAGATAAGAGAAATGGCTATGCGTGGTGGACCCAGTTTTGGAAAAGATCGTGGAGGTATGAACCGTTTTGATCCTAGTAGTGGTAGTGGCCGTTGGGATTCTACTGGTCGTGGCAGAATGAGAGATGCCGGTTTTGGTGGCCGTAGTGGCATGAGGGATGGCGGTTTTAGTGGCCGTGGTGGCATGAGGGATGGCTTTGGCGATCGTGGTGGGAGAAATGATTTCTTTCCTGGTCGTGGTAACAGGGGACGTGGTTTTGGCGGTCCTATGGGAGGAGGCCATGTCGGTTGGAGCAGGAATGACAATGGTGGCCCAAACAACCGATATAACACTATCGATGGCCGAGGCCGGGGCCGGGGCCGTGGGCAAGGTAGATTTGACAACAGAAGAGACATTTCTGATAGGAGCAGGGGCAGAAGTTACAGTCGTAGTCCTGAAAGAGTTCGAACATGGGGTTACAGTAGAAGCCGTAGTAGTAGCCGTAGTAGTCGGAGTCGGAGTCGGAGTCGGAGTCGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCGGAGTCAAAGCTGGAGCCGGAGCCGCAGCCGCAGCCGGAGCCGCAGCCGCACCTGGTCTAGAGGTCATAATCGCAGCCGCAGCCGCAGCCAAAGCCTTGAGAGGCCTCACGCTCAAAACATTGTTAAAGAGAATAGTAAATCTCCAAAACTTGGAACCACATCTGAATCTGCTATGTTTACCAAGCCTCCTGTCAAGGACGGTAACACGGTCTTAGAAACCAGTGATGTGGGTCAGCTGCCTGTGATTGGAAGCGCTGCTCCTGGCTATCCAGAAACTGCAGTAGACAGTGCTGAAACAGTTACCAATTCTTGA 3432 46.91 MAEPTSAALGPRYAPDDPTLPKPWKGLIDGSTGLSYYWNPETNVTQYEKPVATTPPMPLAPIPGGHSVPSNGVTAQIGQQISQGSQHEGQQMSHLSKQPYPVAQQQSSMAVQVSHQEGLQITQALQHHGLHSSQAMHQPGQLQQHKQPMMQYQGQQMLQNTNQHMSQPPNLQALQHPGQIISQQSAPQIPHKISPSQGLPMGQHQGQYAHQQFQYMAYQRNVVPKIQQNLQQQVHHNVQGQSFGNQQEYMTTNSKKEEDDFHHGNQVVFSPSQFQQTSISSANNVHAGTNSIPMQKFGAPSGQAPKFGIPPAGVQQTPPMAQLQATGLDFRPQPLPNFQNQMNPALMHGQQAGVPPNDIKMENEENMSGRVGNEYYASGNKDAPAVSMQQPKLATIPMGRSHQEMRMSGVPFQNTMPGQSSGLNAVAGYSLQNVYSQGMGGQPLPNNSQMRLPMGSSDVTIMSPVENYCKQHEVTTTGDNVPAPFITFEATGFPPEILKEIYSAGFSSPTPIQAQTWPIALQGRDILAIAKTGSGKTLGYLIPAFILLRQRHNNPQNGPTVLVLSPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEMVPQMEKQNRLEQILRSQERGSKVIIFCSTKRLCDHLARSLGRGFGAAAIHGDKSQGERDWVLNQFRNGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSDQDWKYAADLIKVLEGANQQVPPEIREMAMRGGPSFGKDRGGMNRFDPSSGSGRWDSTGRGRMRDAGFGGRSGMRDGGFSGRGGMRDGFGDRGGRNDFFPGRGNRGRGFGGPMGGGHVGWSRNDNGGPNNRYNTIDGRGRGRGRGQGRFDNRRDISDRSRGRSYSRSPERVRTWGYSRSRSSSRSSRSRSRSRSRSRSRSRSRSRSQSWSRSRSRSRSRSRTWSRGHNRSRSRSQSLERPHAQNIVKENSKSPKLGTTSESAMFTKPPVKDGNTVLETSDVGQLPVIGSAAPGYPETAVDSAETVTNS 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8087953 8093459 + Bpe014453.1 Bpe14g01079 115388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01079 1143 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 1019 1063 - -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 1122 1143 - -
Bpe14g01079 1143 Pfam DEAD/DEAH box helicase 510 680 IPR011545 GO:0003676|GO:0005524
Bpe14g01079 1143 SMART ultradead3 505 708 IPR014001 -
Bpe14g01079 1143 SUPERFAMILY WW domain 11 52 IPR036020 GO:0005515
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 184 206 - -
Bpe14g01079 1143 Pfam WW domain 20 50 IPR001202 GO:0005515
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 79 108 - -
Bpe14g01079 1143 CDD WW 21 51 IPR001202 GO:0005515
Bpe14g01079 1143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 691 IPR014001 -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 1 21 - -
Bpe14g01079 1143 CDD SF2_C_DEAD 705 834 - -
Bpe14g01079 1143 SMART helicmild6 741 825 IPR001650 -
Bpe14g01079 1143 Gene3D - 696 867 IPR027417 -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 127 150 - -
Bpe14g01079 1143 Gene3D - 460 695 IPR027417 -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 972 1002 - -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 1072 1099 - -
Bpe14g01079 1143 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 270 945 - -
Bpe14g01079 1143 MobiDBLite consensus disorder prediction 867 1107 - -
Bpe14g01079 1143 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Bpe14g01079 1143 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Bpe14g01079 1143 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 864 IPR001650 -
Bpe14g01079 1143 Pfam Helicase conserved C-terminal domain 717 825 IPR001650 -
Bpe14g01079 1143 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 270 945 - -
Bpe14g01079 1143 SMART ww_5 19 52 IPR001202 GO:0005515
Bpe14g01079 1143 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
Bpe14g01079 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 842 IPR027417 -
Bpe14g01079 1143 Gene3D - 14 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01079 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - jre:109001168 1237.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00649 Bpe-Chr3:26707398 Bpe14g01079 Bpe-Chr14:8087953 7.99E-159 dispersed
Bpe04g00293 Bpe-Chr4:1874421 Bpe14g01079 Bpe-Chr14:8087953 6.11E-101 dispersed
Bpe07g00856 Bpe-Chr7:14710133 Bpe14g01079 Bpe-Chr14:8087953 7.83E-155 dispersed
Bpe08g00949 Bpe-Chr8:11888691 Bpe14g01079 Bpe-Chr14:8087953 2.28E-77 dispersed
Bpe08g01247 Bpe-Chr8:13963206 Bpe14g01079 Bpe-Chr14:8087953 7.57E-104 dispersed
Bpe11g00308 Bpe-Chr11:2242752 Bpe14g01079 Bpe-Chr14:8087953 1.34E-107 dispersed
Bpe11g00406 Bpe-Chr11:3099426 Bpe14g01079 Bpe-Chr14:8087953 3.68E-79 dispersed
Bpe11g00892 Bpe-Chr11:6574671 Bpe14g01079 Bpe-Chr14:8087953 1.88E-104 dispersed
Bpe14g00323 Bpe-Chr14:3152878 Bpe14g01079 Bpe-Chr14:8087953 6.79E-65 dispersed
Bpe14g01079 Bpe-Chr14:8087953 Bpe02g01498 Bpe-Chr2:18235206 1.11E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g229 . . . . . Bpe14g01079 . . . . . . Car06g01343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00946 . . Cmo06g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01079 Bpe_Chr14 FPKM 1.724138 2.080985 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0