Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01107 ATGTCGTTGAGACCGAACGCCAGGACCGAGGTTCGGCGGAACCGCTACAAGGTCGCTGTCGATGCCGAAGAGGGGCGCCGGAGAAGGGAGGATAATATGGTCGAGATCCGAAAAAGTAAGCGCGAAGAAAGCTTGCAGAAGAAGCGCCGTGAAGGTCTTCAGGCTCAGCAGTTCCCCGCTGCCGCGCATGGTTCTGCCGTTGAGAAGAAGCTAGAGAGCCTTCCTTCAATGGTTTCCGGGGTCTGGTCTGACAACAGCGGATTGCAGCTGGAGGCGACGACGCAGTTTCGGAAATTACTTTCCATTGGCACCCCTCCGATAGAGGAAGTTATTCAATCTGGGGTTGTTCCTCGCTTTGTTGAGTTTCTTGTCAGGGAGGATTTTCCGCAGATTCAGTTTGAGGCTGCTTGGGCTCTCACAAACATAGCTTCTGGTACCTCGGAGAATACAAAGGTGGTGATTGATCATGGAGCAGTTCCTATCTTCGTGAAGCTGCTTGGTTCTCCAAGTGATGATGTTAGAGAGCAGCGATGTATGTCTGAGAGCAGGTTTTTTTTACTTGGTTTATTGAATGATTCTGAAACGAAAATTATAAATGAGGAGGATGTTTTTATGATGGTTGTGTATAATGATCAATTTTGGATTCGGCAGGTGAAGCCAGCACTTCCAGCTCTTGAGCGTCTAGTTCATTCTAATGACGAAGAAGTTCTGACTGACGCATGCTGGGCGCTTTCATATCTTTCTGATGGAACTAACGATAAAATTCAAGCAGTTATTGATGCAGGTGTCTGTCCCCGACTTGTGCAGCTTCTCCTACATCCATCTCCTTCTGTCCTTATTCCAGCATTGCGCACAGTTGGAAATATTGTGACGGGTGATGATATTCAGACCCAGTGGATAATCAACCATGGTGCACTACCGTGCCTTCTCAGCCTTTTAACCCACAATCATAAAAAGAGCATAAAGAAAGAAGCATGTTGGACTATCTCAAACATTACTGCTGGAAACAGAGAACAGATACAGTCTGTAATTGAAGCTGGGTTAGTAGCTCCTTTAGTTAATCTGCTTCAAAATGCTGAGTTTGATATAAAGAAAGAGGCTGCATGGGCTATATCAAATGCTACTTCTGGCGGCACTCACGAACAAATTAAATTTCTGGTCAGTCAAGGATGTATAAAGCCGTTGTGCGATCTTCTTGTATGCCCTGATCCAAGGATTGTTACAGTCTGTTTGGAAGGGTTAGAGAATATTCTAAAGGTTGGGGAAGCTGAGAAAGGTTTGGTCAGTGTTGGAGATGTTAATGTATACGCCCAGTTGGTTGATGATGCTGAGGGTTTAGAGAAGATTGAAAATCTTCAGAGTCATGATAACAATGAAATTTACGAGAAGGCAGTCAAACTGCTCGAAACATATTGGTTGGAGGAGGAAGATGAGACGCCAGCGACAGGTGAGGGTGGTAATCAGCCTGGCTTCCGCTTTGGGGAAAACCAGCTTCCAGTTCCATCTGGGGGATTCAATTTCAGCTAA 1527 45.78 MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHGSAVEKKLESLPSMVSGVWSDNSGLQLEATTQFRKLLSIGTPPIEEVIQSGVVPRFVEFLVREDFPQIQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQRCMSESRFFLLGLLNDSETKIINEEDVFMMVVYNDQFWIRQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQWIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQSVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKGLVSVGDVNVYAQLVDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEEEDETPATGEGGNQPGFRFGENQLPVPSGGFNFS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8276138 8279577 + Bpe014482.1 Bpe14g01107 115416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01107 508 PIRSF Importin_alpha 210 507 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bpe14g01107 508 PIRSF Importin_alpha 2 180 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 221 248 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 252 290 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 380 417 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 146 176 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 336 375 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Armadillo/beta-catenin-like repeat 296 334 IPR000225 GO:0005515
Bpe14g01107 508 Gene3D - 11 50 IPR036975 GO:0006606
Bpe14g01107 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Bpe14g01107 508 PANTHER IMPORTIN SUBUNIT ALPHA 2 177 - -
Bpe14g01107 508 MobiDBLite consensus disorder prediction 476 508 - -
Bpe14g01107 508 PANTHER IMPORTIN ALPHA 215 496 - -
Bpe14g01107 508 PANTHER IMPORTIN ALPHA 2 177 - -
Bpe14g01107 508 Pfam Atypical Arm repeat 434 478 IPR032413 -
Bpe14g01107 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 347 IPR000225 GO:0005515
Bpe14g01107 508 MobiDBLite consensus disorder prediction 38 61 - -
Bpe14g01107 508 SUPERFAMILY ARM repeat 6 477 IPR016024 -
Bpe14g01107 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 375 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 336 376 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 293 334 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 251 291 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 379 419 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 103 144 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 210 249 IPR000225 GO:0005515
Bpe14g01107 508 SMART arm_5 146 192 IPR000225 GO:0005515
Bpe14g01107 508 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Bpe14g01107 508 Gene3D - 72 473 IPR011989 -
Bpe14g01107 508 PANTHER IMPORTIN SUBUNIT ALPHA 215 496 - -
Bpe14g01107 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 262 IPR000225 GO:0005515
Bpe14g01107 508 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01107 K15042 KPNA5_6; importin subunit alpha-6/7 - vvi:100248248 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00685 Bpe14g01107 CCT
Bpe13g00685 Bpe14g01107 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01107 Bpe-Chr14:8276138 Bpe14g01175 Bpe-Chr14:8792724 1.76E-07 dispersed
Bpe13g00685 Bpe-Chr13:13516530 Bpe14g01107 Bpe-Chr14:8276138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01107 Bpe_Chr14 FPKM 5.47508 8.071865 8.652089 7.838906 7.462395 7.282981 7.596781 7.176219 7.708392 7.583258