Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01113 ATGAAGACATGGATTGCCGCATGCCACTCCAGAGGAGCAGCTAGGGTTTATATCCCTCGAGGCATATTCATAGTAAGTCAAGTGGCTTTCGCCGGCCCATGCACATGCAGAGGCCCCATTATTTTCCAGATCGACGGCATCATCAAAGCCACTACCGACGTCAGTGAATACGTCTCCGACGAATGGATCTTGTTTGAACGAGTCCACGGCCTCATCGTCACCGGCAGAGGCACCTTGGACGGCCAAGGCAACGCCGTCTGGAAGTACAACGATTGTGGCTCTAACGCCTATTGCCAAAAACTCCCAGTATCGTTGAAATTGAACAACGTTATGCACGGAATAGTGAAGGGGATAACTTCAGTCAACAGCAAAGGGTTTCATATGTTTATCACAAACTCAGACAACATAAGAGTGAGAAGAATTCACTTGTTTGCGCCAGATGAAAGTCCAAATACAGATGGTATCCATCTCAGCCGCTCCAACAACGTGAAAATATCCAAGTCAGTGATCGGTACCGGCGACGATTGCATCTCTCTCGGCCAAGGATCAGTCAACGTCACCGTCAACAAAATAACTTGCGGCCCTGGACATGGATTCATTGGAAGCCTTGGGAAGTACGAGAAGGAGGAAGATGTGCGAGGAGTGATCGTCAAGAACTCCACTTTACTCAACACCCAGAATGGGCTCAGAATCAAAACATGGCCGAATTCACCGCCAAGTGCAGCTTCAGCCATTCTTTTCCAGGATATCAAAATGCACAACGTCAAGAACCCCATCATTATAGACCAAGAGTACAACTGCAAACCAGTCTGCAAAAAAGCGCCTTCTCGAGTAAGAATCAGTGACGTTCATTTCCTAAACGTTCAAGGAACCTCAACCTCTCCGGTCGCCGTAAATCTGAAGTGCAGTAAGCAATTTCCATGCAGAAACATAGGGCTTATTAACATCAATTTGCGTTACAGCGGCGTTCGGAAGATTGGTATACCTTTCACATCTTACTGCAACAATGCCATGGTAGGCTACCGGGGCTTTCAGAGCCCGCCGCCATGCAAATGA 1056 47.82 MKTWIAACHSRGAARVYIPRGIFIVSQVAFAGPCTCRGPIIFQIDGIIKATTDVSEYVSDEWILFERVHGLIVTGRGTLDGQGNAVWKYNDCGSNAYCQKLPVSLKLNNVMHGIVKGITSVNSKGFHMFITNSDNIRVRRIHLFAPDESPNTDGIHLSRSNNVKISKSVIGTGDDCISLGQGSVNVTVNKITCGPGHGFIGSLGKYEKEEDVRGVIVKNSTLLNTQNGLRIKTWPNSPPSAASAILFQDIKMHNVKNPIIIDQEYNCKPVCKKAPSRVRISDVHFLNVQGTSTSPVAVNLKCSKQFPCRNIGLININLRYSGVRKIGIPFTSYCNNAMVGYRGFQSPPPCK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8312439 8313747 - Bpe014488.1 Bpe14g01113 115422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01113 351 PANTHER EXOPOLYGALACTURONASE-LIKE 1 350 - -
Bpe14g01113 351 PANTHER - 1 350 - -
Bpe14g01113 351 Gene3D - 1 347 IPR012334 -
Bpe14g01113 351 SUPERFAMILY Pectin lyase-like 4 350 IPR011050 -
Bpe14g01113 351 SMART pbh1 160 181 IPR006626 -
Bpe14g01113 351 SMART pbh1 212 233 IPR006626 -
Bpe14g01113 351 SMART pbh1 133 159 IPR006626 -
Bpe14g01113 351 SMART pbh1 242 263 IPR006626 -
Bpe14g01113 351 SMART pbh1 275 302 IPR006626 -
Bpe14g01113 351 Pfam Glycosyl hydrolases family 28 8 337 IPR000743 GO:0004650|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01113 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101212922 550.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01113 Bpe-Chr14:8312439 Bpe15g00744 Bpe-Chr15:17875478 5.41E-89 dispersed
Bpe13g00673 Bpe-Chr13:13468549 Bpe14g01113 Bpe-Chr14:8312439 0 wgd
Bpe14g01113 Bpe-Chr14:8312439 Bpe06g00537 Bpe-Chr6:16455890 5.09E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000368 1 4 0 3 4 5 5 3 3 8 3 4 4 4 4 5 4 2 4 3 2 3 3 8 11 6 8 2 6 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01113 Bpe_Chr14 FPKM 0.017544 0.030615 0.018808 0.026696 0.0 0.0 0.097902 0.0 0.037036 0.032517