Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01129 ATGGGGAGCTTGAATCTCCATAGCCTTCTTCTCTCGTGTGCAATCTTGGCCGTCGGTGCTATACTACTGTCTTCAGCAGCCATTGATTTCAGCGGGGAGGGAGAGCCGCTGTACATTCCTGCAAAATCAGAGGAGTGCCGAGGTTCCATCGCCGAGTGCATGATGGTGGGCAGCGACCTGTCGGGGCTAGAAATGGAGTTCGAGATGGATTCAGAGATCAACCGGCGCATTCTAGCAACGTCGAGGTATATCAGCTACGAGGCGTTGAGGAGCAACAGCGTACCGTGTTCCCGGCGAGGTGCGTCCTACTACAATTGCCGGCCTGGGGCTCAGGCGAATCCCTACTCGCGCGGCTGCAGCGCCATTACCCGCTGCCGGAGCTAA 384 57.29 MGSLNLHSLLLSCAILAVGAILLSSAAIDFSGEGEPLYIPAKSEECRGSIAECMMVGSDLSGLEMEFEMDSEINRRILATSRYISYEALRSNSVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8402016 8402399 - Bpe014504.1 Bpe14g01129 115438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01129 127 Pfam Rapid ALkalinization Factor (RALF) 66 126 IPR008801 -
Bpe14g01129 127 PANTHER PROTEIN RALF-LIKE 33 8 127 - -
Bpe14g01129 127 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 8 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01129 - - - bhj:120067692 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00580 Bpe-Chr9:14596563 Bpe14g01129 Bpe-Chr14:8402016 1.16E-38 dispersed
Bpe11g01383 Bpe-Chr11:10344138 Bpe14g01129 Bpe-Chr14:8402016 1.46E-36 dispersed
Bpe14g00142 Bpe-Chr14:1892846 Bpe14g01129 Bpe-Chr14:8402016 8.29E-07 dispersed
Bpe14g00647 Bpe-Chr14:5255629 Bpe14g01129 Bpe-Chr14:8402016 2.11E-17 dispersed
Bpe14g00851 Bpe-Chr14:6357866 Bpe14g01129 Bpe-Chr14:8402016 5.22E-14 dispersed
Bpe14g01129 Bpe-Chr14:8402016 Bpe04g01086 Bpe-Chr4:8396152 9.29E-17 wgd
Bpe14g01129 Bpe-Chr14:8402016 Bpe06g00516 Bpe-Chr6:16318588 3.56E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g323 . . . . . Bpe14g01129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007219 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01129 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe14g01129 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0