Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01139 ATGGCAACCGTTTCCATCTGCTTCGCGCTTCAAGCTATGGTTCGACCTCTAGTTCGAAGTCCTAATAGACTTCCACAGGGCAAAAAACTACATGGAAACCCTAATATTGACCGGAATCAGGTGAAGCTACAAACCAGTTCTAAGGAGTTGTCGTCCAGTGGCGTCGAGGCGACCACGTACAATCGTCTTCCCCCGAAAGAAGATTTCGCTACTCTCTATGTTGATTCTGCTTCTTTTTCTTCTCCAGAATCTCAGTTTCCTTTTGAGGTGAAGCTCTCCGATTCCGATGTGGTGAATAAAGGAGAAGAGTCTGATTGTATGAACGGAGAAGAAGAAAATGATGAAGCTGGAGGGAGTATGGATGATATTTTTGCATTTGATTACTTTAAGAGGGAATTACGTGCTGACGGGAAGGAGTATGAAATCAGCGATGAGGAAGACGAAGAGGGTGTTGATTATGGAGGTGTAGAATATCTGAAGTCTGGGGATGGTGAAGTGGTTACTTTTTCCGATGAGGAAGAAGATGTGAAGGAAAAAGGTGTTCCAGCAGTAATGAGATGTTTCGATCGTGCAAAAATCTATGCCAAAGCTGGGGATGGCGGGAATGGCGTCGTAGCTTTCCGGCGAGAGAAGTTCGTGCCTTTGGGTGGGCCATCTGGAGGGGATGGAGGAAGAGGAGGGAATGTGTGTGTTGAAGTGGATGGATCGATGAATTCTCTATTGCCATTTCGAAATAGAGTGCATTACCGAGCTGGGAGGGGTGGTCATGGACAGGGGAGGATGCAAAACGGAGCAAAAGGAGAGGATGTAGTGATAAAGGTAGCTCCTGGTACAGTAATCAGAAAGGCAGGTAGCGATGAGGTTCTTCTTGAGTTGTTATATCCAGAACAACGAGCACTGTTGTTACCAGGAGGGAGAGGTGGAAGAGGCAATGTATCCTTCAAATCAGGAAGTAATAAGGTTCCTAAGATTGCGGAAAATGGAGAAGAGGGTCCAGAAATGTGGCTGGACTTGGAGTTAAAACTAGTTGCAGATGTTGGTATAGTTGGGGCTCCAAATGCTGGAAAAAGCACATTACTAAGCATGATAAGTGCTGCCCAGCCAGCCATAGCAAATTACCCCTTTACAACATTGCTACCTAACTTAGGTGTGGTTTCATTTGATTATGATTCTACTATTGTAGTGGCAGATCTACCAGGTTTACTTGAAGGGGCGCACCGAGGCTTTGGTTTAGGCCATGAGTTTCTACGACATACTGAAAGGTGTTCTTCTCTGGTGCATGTAGTTGATGGATCAGGACCTCAACCAGAATATGAGTTTGAGGCCGTTCGCCTGGAGTTGGAACTCTTTAGTCCTGAACTAGCTGAAAAGCCTTATGTAGTTGCCTACAACAAAATGGACCTTCCTGAAGCTTATGAAAACTGGCCCTTATTCAAGGAAAAGTTGCAAGCACGTGGGATTGAACCTTTTTGTATAAGTGCAGTAAAAAGAGAAGGAACTTATGATGTCATTTGTGCTGCTTTTGAGCTGTTAAAGAAAAATAAAGAAATTAAGGAGTTTGAAGGTGTGAGACTTCCGGAAAACTTGAACCATGTAGCTGAAATGGTTAGGAAGCAACGAAGTGCCTCTATAAATGACTTTGAGATCTCTTACGAGAGCAATTCTAAATCCTGGCATGTGGTTGGATCTGGTTTGGAGCGTTTTGTTCAGATGACAAATTGGCGGTACATGGACTCTGAGAAAAGGTTTCAACATGTTTTAGAGGCTTGTGGTGTGCATAAATCTCTTCTGAAACTTGGTGTAAAGGAAGGTGACACAGTGCATGTTGCTGGGATGGAAATGGTTTGGAATAACTCACCTGATAGTTTCGGTCCATCTAAGGTGAAGAAAGGGCCAGAAGGTTCAATTAAATGGGCCGAGTGGAAGTAA 1929 44.22 MATVSICFALQAMVRPLVRSPNRLPQGKKLHGNPNIDRNQVKLQTSSKELSSSGVEATTYNRLPPKEDFATLYVDSASFSSPESQFPFEVKLSDSDVVNKGEESDCMNGEEENDEAGGSMDDIFAFDYFKRELRADGKEYEISDEEDEEGVDYGGVEYLKSGDGEVVTFSDEEEDVKEKGVPAVMRCFDRAKIYAKAGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVCVEVDGSMNSLLPFRNRVHYRAGRGGHGQGRMQNGAKGEDVVIKVAPGTVIRKAGSDEVLLELLYPEQRALLLPGGRGGRGNVSFKSGSNKVPKIAENGEEGPEMWLDLELKLVADVGIVGAPNAGKSTLLSMISAAQPAIANYPFTTLLPNLGVVSFDYDSTIVVADLPGLLEGAHRGFGLGHEFLRHTERCSSLVHVVDGSGPQPEYEFEAVRLELELFSPELAEKPYVVAYNKMDLPEAYENWPLFKEKLQARGIEPFCISAVKREGTYDVICAAFELLKKNKEIKEFEGVRLPENLNHVAEMVRKQRSASINDFEISYESNSKSWHVVGSGLERFVQMTNWRYMDSEKRFQHVLEACGVHKSLLKLGVKEGDTVHVAGMEMVWNNSPDSFGPSKVKKGPEGSIKWAEWK 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8490580 8494982 - Bpe014515.1 Bpe14g01139 115448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01139 642 ProSiteProfiles Obg C-terminal (OCT) domain profile. 539 618 IPR015349 GO:0000166
Bpe14g01139 642 PRINTS GTP1/OBG GTP-binding protein family signature 367 385 IPR006073 GO:0005525
Bpe14g01139 642 PRINTS GTP1/OBG GTP-binding protein family signature 346 366 IPR006073 GO:0005525
Bpe14g01139 642 PRINTS GTP1/OBG GTP-binding protein family signature 395 410 IPR006073 GO:0005525
Bpe14g01139 642 PRINTS GTP1/OBG GTP-binding protein family signature 412 430 IPR006073 GO:0005525
Bpe14g01139 642 SUPERFAMILY Obg GTP-binding protein C-terminal domain 546 618 IPR036346 -
Bpe14g01139 642 Gene3D GTP1/OBG domain 183 342 IPR036726 -
Bpe14g01139 642 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 344 512 IPR031167 GO:0005525
Bpe14g01139 642 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 188 510 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bpe14g01139 642 SUPERFAMILY Obg GTP-binding protein N-terminal domain 188 342 IPR036726 -
Bpe14g01139 642 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 146 591 - -
Bpe14g01139 642 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 146 591 IPR045086 GO:0003924|GO:0005525
Bpe14g01139 642 Pfam Domain of unknown function (DUF1967) 547 616 IPR015349 GO:0000166
Bpe14g01139 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 513 IPR027417 -
Bpe14g01139 642 ProSitePatterns GTP1/OBG family signature. 397 410 IPR006074 GO:0005525
Bpe14g01139 642 Pfam GTP1/OBG 189 342 IPR006169 -
Bpe14g01139 642 Pfam 50S ribosome-binding GTPase 345 465 IPR006073 GO:0005525
Bpe14g01139 642 CDD Obg 344 511 IPR031167 GO:0005525
Bpe14g01139 642 Hamap GTPase Obg [obg]. 186 512 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bpe14g01139 642 ProSiteProfiles Obg domain profile. 185 343 IPR006169 -
Bpe14g01139 642 Gene3D - 344 551 IPR027417 -
Bpe14g01139 642 Gene3D - 552 618 IPR036346 -
Bpe14g01139 642 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 547 617 IPR015349 GO:0000166
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01139 - - - cmax:111472313 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00669 Bpe-Chr3:26873578 Bpe14g01139 Bpe-Chr14:8490580 1.68E-12 dispersed
Bpe04g00226 Bpe-Chr4:1520395 Bpe14g01139 Bpe-Chr14:8490580 5.24E-11 dispersed
Bpe14g00873 Bpe-Chr14:6505374 Bpe14g01139 Bpe-Chr14:8490580 1.20E-07 dispersed
Bpe14g01139 Bpe-Chr14:8490580 Bpe05g00117 Bpe-Chr5:2366563 6.97E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01139 Bpe_Chr14 FPKM 1.24359 0.0 1.900159 1.71021 1.714549 1.260619 1.456898 0.614762 0.588655 0.800789