Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01145 ATGGAGAGGTCTTCCAATGAACGCCTTGATTTCGGAAAGATGGGATACGGATGCAAGCATTATAGAAGGAGATGTCGGATTCGAGCTCCATGCTGCAACGAAATCTATTCTTGTCGTCATTGTCATAACGAGGCCACATGCATGTTGAGAAATCCCTTTGACAGGCATGAGCTTGATCGCCATGACGTAAAACAAGTCGTTTGTTCTGTTTGCGACACAGAACAGTCGGTATGTGCTTCGATGGTTTGCACCAACTGCGGTATAAGAATGGGGGAATATTTCTGCGAAATTTGCAAATTTTACGATGATGATATTGATAAAGGACTGTTTCATTGCGATGATTGCGGTATCTGTAGGGTCGGCGGTCGTGATCGGTTTTTCCATTGCAAGAAGTGTGGGTCCTGCTATTCGGTTAGTCTTCGGGAGAATCATTCATGCATCGAGGATTCCATGCGGCACCACTGCTCGATATGCTACGAGTTTCTATTCGACTCCATGAAAGACACAACCGTCATGAAATGTGGCCACACAATGCATAGCGAGTGTTATTACGAAATGTTAAAGCGCGACCAGTATTGTTGTCCGATATGCTCTAAATCGGTGATAGACATGTCGAGAACTTGGAAAAGAATAGATGAAGAGATTTTTCCAGTAGAAATAGAAGAAGTTGAGTATTTTTTGCAGGTTTGGATAGTGTGTAAAGACTGCAATGACACAACAGAGGTTTATTTCCACACGGTTGGGCAGAAATGCAGCCACTGCAAATCATGCAATACCTCCTCAATTGCTCCTCCTGTTCTTCCTCAGTGA 810 43.7 MERSSNERLDFGKMGYGCKHYRRRCRIRAPCCNEIYSCRHCHNEATCMLRNPFDRHELDRHDVKQVVCSVCDTEQSVCASMVCTNCGIRMGEYFCEICKFYDDDIDKGLFHCDDCGICRVGGRDRFFHCKKCGSCYSVSLRENHSCIEDSMRHHCSICYEFLFDSMKDTTVMKCGHTMHSECYYEMLKRDQYCCPICSKSVIDMSRTWKRIDEEIFPVEIEEVEYFLQVWIVCKDCNDTTEVYFHTVGQKCSHCKSCNTSSIAPPVLPQ 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8551881 8554979 + Bpe014520.1 Bpe14g01145 115454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01145 269 SUPERFAMILY CHY zinc finger-like 15 89 IPR037274 GO:0008270
Bpe14g01145 269 ProSiteProfiles Zinc finger RING-type profile. 155 198 IPR001841 -
Bpe14g01145 269 SMART ring_2 155 197 IPR001841 -
Bpe14g01145 269 Pfam Ring finger domain 154 197 IPR001841 -
Bpe14g01145 269 SUPERFAMILY RING/U-box 154 204 - -
Bpe14g01145 269 ProSiteProfiles Zinc finger CTCHY-type profile. 90 154 IPR017921 -
Bpe14g01145 269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 269 - -
Bpe14g01145 269 ProSiteProfiles Zinc finger CHY-type profile. 11 88 IPR008913 GO:0008270
Bpe14g01145 269 Pfam CHY zinc finger 18 100 IPR008913 GO:0008270
Bpe14g01145 269 Gene3D - 227 264 - -
Bpe14g01145 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 269 - -
Bpe14g01145 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 216 IPR013083 -
Bpe14g01145 269 SUPERFAMILY Zinc hairpin stack 91 148 IPR037275 -
Bpe14g01145 269 Pfam Zinc-ribbon 202 259 IPR039512 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01145 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - jre:109005953 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00586 Bpe-Chr2:3807524 Bpe14g01145 Bpe-Chr14:8551881 3.37E-101 dispersed
Bpe14g01145 Bpe-Chr14:8551881 Bpe15g00528 Bpe-Chr15:16437261 3.67E-43 dispersed
Bpe14g01145 Bpe-Chr14:8551881 Bpe05g00846 Bpe-Chr5:21662122 2.89E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g352 . . . . . Bpe14g01145 . . . . Cma06g01471 Cma14g01639 Car06g01268 Car14g01465 Sed02g1217 Cpe08g00210 Cpe03g01381 Bhi01g00960 Tan10g0963 Cmetu01g0074 . . . Lcy11g1444 . . . . . . . . Cone15ag0784 . Cone4ag0170 Lsi05g01510 . . Cme06g00698 Blo02g00584 . . Bda13g00166 . . . . . Cmo06g01470 Cmo14g01678 . . . . . . . . . . . . . Cla05g00622 Cam05g0683 Cec05g0692 Cco05g0688 Clacu05g0677 Cmu05g0645 Cre05g0716 . Csa03g01422 Chy06g00663 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001789 2 2 0 2 2 2 4 2 1 2 2 2 4 2 2 4 2 4 4 1 2 2 1 2 2 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01145 Bpe_Chr14 FPKM 14.311005 14.507862 16.2071 15.621118 17.033169 18.468868 18.518618 35.757347 37.120628 31.470123