Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01173 ATGGCTCAGCTGGACAGCCAGCAACCCTCCCTCCACCATCTCCGTCGCGCCAAGTCTTTGATTTCTGCCCTCAACCTCGTCTCCCGCAATCTTCCTCTGCCTCCTCAACTTTTTGACACCGTTTCCTCTATCTATTCCGCTGCTCCAGCCGAAAACGACGACCCCTGCGATGATAAGGATACTCATCCGAGTGACCCTCAAGAAGATTTATTGAGTGAAATTGAGGATGCCCTAACCAGTCAGCGATCAGAATGCGCGTCAAGTTTTGGATTGACAGACTCAAGAGAGAATCGGTATCAGAGCAGCGTACACCATCGGCTGACTGAACTTGAAGAATTACCATCCAATAGAGGAGAGAACTTGCAGACAAAGTGCTTGATTGAGCTCTATGGCTTAAAGCTAGGAGAATTGCAAAGAAAGGTTCGATCAGATTTGAGCTTGGAGTACTTGCTACATAAGACTTGTGCATATCCCGATAAGCAATTATTTGATTGGGGGATGATGCGGTTGCATCGCCTTCCATATGGTGTAGGAGATTCTTTTGCTACCGAAGCTGATGATCAGTTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAGGTTAAAAGAGGAGGAGAAGAACCACGTCGAGACTAGGAAAAGAAAATTTTTTACAGAAATACTCAATGCAGTTCGGGAGTTCCAGTTGCAAAATCAAGCTACTTTGAAACGCCGAAAACAAAGGAATGATGGAATCCAGGCTTGGCATGGAAGGCAAAGACAGCGAGCAACTCGGGCAGAGAAACTGAGGTTCCAAGCACTAAAGGCAGATGACCAAGAAGCGTACATGAGACTGGTTAAGGAGAGCAAGAATGAACGATTAACTATTCTTCTTGAAGAAACTAATAAGTTGCTCGTTAATTTGGGCGCCGCTGTTCAACGGCAAAAGGATTCTAAACTTTCAGATGGCATTGAAACCTTGGATGACTCAGAAACTGATTTGTCCGAGTTGGATACTTCAAAGAATGGAACCCCTCCAGATTTTCTTCCCGAGGAAGATGTGGATGCCAATGATTCAGATCACAATGATGACGCAGATGATCTACTCGAAGGACAGAGGCAGTATAACTCCGCTATTCATGCTATCCAAGAAAAGGTCACTGAGCAACCATCCATGTTGCAAGGAGGAGAATTAAGATCCTACCAAATAGAGGGGCTGCAATGGATGCTTTCTTTATTTAACAACAACTTAAATGGAATTTTGGCTGATGAGATGGGATTGGGAAAGACAATCCAAACCATTTCATTGATTGCTTATCTGATGGAATTCAAGGATGTGACAGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTGCTGCCAAATTGGATGATTGAATTCTCAACATGGGCGCCTAGTGTTGCAGCTGTTCTTTATGATGGGCGACAAGATGAAAGAAAGGCAATCAAAGAAGAATTATTGGGAGATAGGAAATTTAATGTGTTGGTTACACATTATGATCTAATAATGAGAGATAAATCATTTTTGAAGAAAATCCACTGGTACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCGAGAATGTGCTCTATCACAAACACTTTCAGGCTATCAAATAAAGCGCAGGCTTCTTTTGACTGGTACCCCCATACAGAACAGTTTGCAGGAACTATGGTCCCTACTTAATTTTCTTCTTCCGCATATTTTTAATTCCGTTCAGAATTTCCAGGAGTGGTTTAATGCCCCCTTTGTTGGTCGTGGGGATGTGTCTTTGACTGATGAAGAAGAGTTATTAATCATTCGACGTTTGCATCACGTTATTAGGCCATTTATATTGAGGCGAAAAAAAGATGAAGTGGAGAAATATCTTCCCGGTAAGTCACAGGTCATTCTAAAATGTGATATGTCAGCATGGCAGAAAGTATATTATCAACAAGTTACAGATGATGGCAGAGTTGATACTGGTTCTGGGAAGTCAAAGACTCTGCAGAATCTAACAATGCAGCTTAGAAAGTGTTGTAACCACCCATATCTTTTCATAACTGGAGATTATAACATCTGGCGAAAGGAAGAAATCATCAGAGCATCTGGGAAATTTGAACTGCTTGATCGTTTACTCCCGAAGCTACGCAGAGCTGGACACAGAGTTTTGCTTTTCTCACAAATGACACGTCTGATGGACATTCTTGAAATATATCTGCAGCTACACGATTTCAAATATCTTAGACTGGATGGTTCGACAAAAACCGAGGAAAGAGGTTCTCTACTGAAGCAATTCAATGCTCCCGACTCTCCTTTCTTCATGTTTCTCCTGAGTACTCGTGCTGGGGGGCTTGGTTTGAACTTACAGACAGCAGATACCGTTATAATTTTTGACAGCGATTGGAATCCTCAAATGGACCAACAAGCTGAGGATCGTGCCCATCGAATAGGACAAAAGAAAGAAGTTAGGGTGTTTGTCTTGGTCAGTGTTGGATCAATTGAGGAGGTAATATTGGAACGTGCAAAAGAAAAGATGGGCATTGACGCCAAGGTCATCCAGGCAGGACTTTTCAATACGACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATCATGCGTCGAGGAACAAGCTCGCTTGGAACAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCAAGGTCAGATGAGGAATTTTGGCTTTTTGAGAAGATGGACGAGGAGAGAAGACAAAAAGAGAATTACCGATCCCGGCTTATGGAGGAACACGAGGTGCCGGAGTGGGTGTACTCTGCACCCGATAACAAGGAAGAAAAGAACAGAGGTTTCGACAGCATTACTGGAAAACGGCGAAGAAAGGAGGTGGTTTATGCAGATTCACTCAGTGACTTGCAGTGGATGAGGGCAGTAGAAAATGGAGAAGATATATACAGTCTTTCTGTTAAAGGGAAGAGAAGAGAACTGACAGCTGATGGCACAACAACAACAATTATAAGCAACTTGAGGGTTGAAAGTAAAGAAATAGAATTGCACGAAACTGCGACAATTGTTAGTGAAGGCACTAGTGAGGACACCATCGGAGTAGAATCAACCCCAAAGAGGCACAAGTTCGAAGAAGCCATGATTGGAATCCATGAATATGATTCAACCTCAAGAAACGAGTGGCATAACCATATGTTCACATGGAATACTCATAAGAAAAAGAGATCTAGCTATGTAAATCAAGGCTCATCTACTGATTCTAGAGGACATAATTCGTATGGAAGAGGAAATGGGTGGTCTTAA 3279 42.91 MAQLDSQQPSLHHLRRAKSLISALNLVSRNLPLPPQLFDTVSSIYSAAPAENDDPCDDKDTHPSDPQEDLLSEIEDALTSQRSECASSFGLTDSRENRYQSSVHHRLTELEELPSNRGENLQTKCLIELYGLKLGELQRKVRSDLSLEYLLHKTCAYPDKQLFDWGMMRLHRLPYGVGDSFATEADDQLRKKRDAERLSRLKEEEKNHVETRKRKFFTEILNAVREFQLQNQATLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTILLEETNKLLVNLGAAVQRQKDSKLSDGIETLDDSETDLSELDTSKNGTPPDFLPEEDVDANDSDHNDDADDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEFKDVTGPHLIVAPKAVLPNWMIEFSTWAPSVAAVLYDGRQDERKAIKEELLGDRKFNVLVTHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRECALSQTLSGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFVGRGDVSLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDDGRVDTGSGKSKTLQNLTMQLRKCCNHPYLFITGDYNIWRKEEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGSLLKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKEKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAPDNKEEKNRGFDSITGKRRRKEVVYADSLSDLQWMRAVENGEDIYSLSVKGKRRELTADGTTTTIISNLRVESKEIELHETATIVSEGTSEDTIGVESTPKRHKFEEAMIGIHEYDSTSRNEWHNHMFTWNTHKKKRSSYVNQGSSTDSRGHNSYGRGNGWS 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8776575 8788247 + Bpe014547.1 Bpe14g01173 115482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01173 1092 Pfam SNF2-related domain 394 679 IPR000330 GO:0005524|GO:0140658
Bpe14g01173 1092 Pfam Helicase conserved C-terminal domain 699 812 IPR001650 -
Bpe14g01173 1092 Pfam Snf2-ATP coupling, chromatin remodelling complex 906 965 IPR029295 GO:0042393
Bpe14g01173 1092 Coils Coil 903 923 - -
Bpe14g01173 1092 MobiDBLite consensus disorder prediction 48 67 - -
Bpe14g01173 1092 SMART helicmild6 728 812 IPR001650 -
Bpe14g01173 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 869 IPR001650 -
Bpe14g01173 1092 CDD SF2_C_SNF 690 823 - -
Bpe14g01173 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 615 IPR027417 -
Bpe14g01173 1092 MobiDBLite consensus disorder prediction 52 67 - -
Bpe14g01173 1092 MobiDBLite consensus disorder prediction 344 358 - -
Bpe14g01173 1092 MobiDBLite consensus disorder prediction 310 360 - -
Bpe14g01173 1092 SMART ultradead3 387 579 IPR014001 -
Bpe14g01173 1092 Gene3D - 382 624 IPR038718 -
Bpe14g01173 1092 MobiDBLite consensus disorder prediction 1064 1092 - -
Bpe14g01173 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 568 IPR014001 -
Bpe14g01173 1092 Gene3D - 625 843 IPR027417 -
Bpe14g01173 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 866 IPR027417 -
Bpe14g01173 1092 SMART SnAC_2 905 965 IPR029295 GO:0042393
Bpe14g01173 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1031 - -
Bpe14g01173 1092 PANTHER ATP-DEPENDENT HELICASE BRM 12 1031 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01173 - - - csv:101222943 1727.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00075 Bpe-Chr4:579264 Bpe14g01173 Bpe-Chr14:8776575 1.07E-103 dispersed
Bpe04g00567 Bpe-Chr4:3591285 Bpe14g01173 Bpe-Chr14:8776575 1.89E-48 dispersed
Bpe05g00850 Bpe-Chr5:21706595 Bpe14g01173 Bpe-Chr14:8776575 7.94E-137 dispersed
Bpe08g00285 Bpe-Chr8:1715892 Bpe14g01173 Bpe-Chr14:8776575 6.34E-132 dispersed
Bpe09g00348 Bpe-Chr9:3442010 Bpe14g01173 Bpe-Chr14:8776575 1.55E-78 dispersed
Bpe11g01720 Bpe-Chr11:13523139 Bpe14g01173 Bpe-Chr14:8776575 5.30E-87 dispersed
Bpe13g00452 Bpe-Chr13:12033551 Bpe14g01173 Bpe-Chr14:8776575 7.48E-125 dispersed
Bpe14g00052 Bpe-Chr14:851071 Bpe14g01173 Bpe-Chr14:8776575 2.66E-72 dispersed
Bpe14g00988 Bpe-Chr14:7301012 Bpe14g01173 Bpe-Chr14:8776575 8.84E-161 dispersed
Bpe14g01173 Bpe-Chr14:8776575 Bpe15g00433 Bpe-Chr15:15827515 1.06E-126 dispersed
Bpe14g01173 Bpe-Chr14:8776575 Bpe14g01153 Bpe-Chr14:8586680 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22514 PF00176 SNF2_N 6.90E-68 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01173 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 12.82445 18.85146 10.855798 0.0 0.0 0.0