Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01174 ATGGATTCTGCAATCATGGGTTCGCAAAGAAAGCCATTTACAATCAAACTGTGGCCACCCAGCCAAAACACGAGGCAAATGCTTGTAGAGCGGATGACAAACAATATGACTACAAAGTCATTTTTCACCCAGAAGTATGGCCTTCTTGGCAAGGAAGAGGCTGAGAAGGAATCTAAAAGGATTGAGGATATAGCTTTTGTTGCTGCAAATGAAAATTATCAAAAGCTTCCCGATGGCGATGGAGGTTCTGCAGTGCAGCTTTATGCGAAGGAATGTAGCAAACTTCTTCTTGAAGCTTTGAAAAGGGGCCCTCAAAGCAAAGTAAACCGAGACTTGACGATATCTAATGATATCACTCCAACTTATGAAACCTGTTTTGATCTTTCTAAGGACCATAGAGCATTTATCGAGTTGGAAGAGGCTGAAGAATTGCTACAGCCATTGAAAGAGCCGGGAAATTCATATACAAAAATATGTTTCAGCAATAGAAGCTTTGGCTTAGGAGCAGCTCAGGTTGCAGAGCCGATTTTGGTCTCTATTAAGGATCAGTTAAAAGAGGTCGATCTATCGGATTTTATTGCTGGTAGACCCAAGGAGGAGGCTCTAGAAGTCATGAAGATATTTGCCACTGCCTTACAAGGCAGTATTTTGAGGTCTCTCAACCTCTCGAACAATGCATTGGGTGAGAAGGGTGTTCGAGCATTCGGGGCACTGCTGAAATCACAAAACTGTTTAGAAGAACTCTATTTGATGAATGGCGGAATCTCTCAAGAAGCTGCAAGAGCAGTGGCCGAGCTGATTCCCTCGACGGAGAAACTTAAAATACTTCATTTCCATAATAACATGACCGGAGATGAAGGAGCTATTGCTATTTCTGAAGTTGTAAAGCAATCTCCGTTATTGGAGGATTTTCGCTGCTCTTCTACGAGGATAGGCTCCGATGGCGGGATTGCCTTGTCTATCGCACTTGAGACGTGTACCGGTTTGAGGAAGCTCAATCTGAGAGACAACATGTTTGATACTGAAAGTGGAGTTGCTCTTAGTAGAGCTCTTTCAAAGCATGCAGGTTTGAAGGAGGTCTATTTGAGCTACTTGAACTTAGGAGATGAAGGCACCATTGCCATAGTCAATGCTCTAAAGGAAACTGCTCCTTCACTTGAAGTCTTGGAAATGGCTGGAAATGATATAACAGCAAATGCCGCTTCGGATATAGCTGCTTGCATTTCGAAAAAGCAGTATCTTGCTAAATTGAACTTGTCGGAGAATGAACTCAAGGACAAAGGGGTGGTATTGATCAGCAAGGCTCTAGAAGATCACACCCATTTGAAAGAAGTAGATATGAGTACCAACTCAATGGGGAGGGCCGGAGCCCGGGTTTTGGCCCAAATTGTGGTTGAGAAATCGGAGTTCGTGCTGCTCAACATTAACGGGAATTACATCTCCGATGAAGGCATCGACGAGTTGAAGGATATTTTCAAGAAATCTCCAGTTATGCTTGGTTCTCTGGATGAAAATGACCCTGAAGGAGGGGACGATGATGGTGGAGAATCTGCCACAGGTGGAGACGACGATGAACTGGAAACTAAGTTGAAGAAGCTTGAAGTCACAGAGGAGGATTAA 1620 43.64 MDSAIMGSQRKPFTIKLWPPSQNTRQMLVERMTNNMTTKSFFTQKYGLLGKEEAEKESKRIEDIAFVAANENYQKLPDGDGGSAVQLYAKECSKLLLEALKRGPQSKVNRDLTISNDITPTYETCFDLSKDHRAFIELEEAEELLQPLKEPGNSYTKICFSNRSFGLGAAQVAEPILVSIKDQLKEVDLSDFIAGRPKEEALEVMKIFATALQGSILRSLNLSNNALGEKGVRAFGALLKSQNCLEELYLMNGGISQEAARAVAELIPSTEKLKILHFHNNMTGDEGAIAISEVVKQSPLLEDFRCSSTRIGSDGGIALSIALETCTGLRKLNLRDNMFDTESGVALSRALSKHAGLKEVYLSYLNLGDEGTIAIVNALKETAPSLEVLEMAGNDITANAASDIAACISKKQYLAKLNLSENELKDKGVVLISKALEDHTHLKEVDMSTNSMGRAGARVLAQIVVEKSEFVLLNINGNYISDEGIDELKDIFKKSPVMLGSLDENDPEGGDDDGGESATGGDDDELETKLKKLEVTEED 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8788881 8790500 - Bpe014548.1 Bpe14g01174 115483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01174 539 MobiDBLite consensus disorder prediction 522 539 - -
Bpe14g01174 539 Gene3D WPP domain 14 111 IPR038214 -
Bpe14g01174 539 SUPERFAMILY RNI-like 125 510 - -
Bpe14g01174 539 Pfam Leucine Rich repeat 411 432 IPR001611 GO:0005515
Bpe14g01174 539 Pfam Leucine Rich repeat 384 405 IPR001611 GO:0005515
Bpe14g01174 539 Pfam Leucine Rich repeat 217 235 IPR001611 GO:0005515
Bpe14g01174 539 SMART LRR_RI_2 467 494 - -
Bpe14g01174 539 SMART LRR_RI_2 354 381 - -
Bpe14g01174 539 SMART LRR_RI_2 326 353 - -
Bpe14g01174 539 SMART LRR_RI_2 214 241 - -
Bpe14g01174 539 SMART LRR_RI_2 270 297 - -
Bpe14g01174 539 SMART LRR_RI_2 383 410 - -
Bpe14g01174 539 SMART LRR_RI_2 242 269 - -
Bpe14g01174 539 SMART LRR_RI_2 439 466 - -
Bpe14g01174 539 SMART LRR_RI_2 411 438 - -
Bpe14g01174 539 MobiDBLite consensus disorder prediction 499 539 - -
Bpe14g01174 539 Pfam WPP domain 15 108 IPR025265 -
Bpe14g01174 539 Gene3D Ribonuclease Inhibitor 417 512 IPR032675 -
Bpe14g01174 539 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 539 IPR045203 GO:0005096
Bpe14g01174 539 Gene3D Ribonuclease Inhibitor 129 412 IPR032675 -
Bpe14g01174 539 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 539 - -
Bpe14g01174 539 MobiDBLite consensus disorder prediction 505 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01174 K14319 RANGAP1; Ran GTPase-activating protein 1 - jre:109010462 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00166 Bpe-Chr4:1083793 Bpe14g01174 Bpe-Chr14:8788881 7.79E-15 dispersed
Bpe06g00469 Bpe-Chr6:15999495 Bpe14g01174 Bpe-Chr14:8788881 0 dispersed
Bpe11g00572 Bpe-Chr11:4385920 Bpe14g01174 Bpe-Chr14:8788881 2.34E-09 dispersed
Bpe13g00481 Bpe-Chr13:12257990 Bpe14g01174 Bpe-Chr14:8788881 8.68E-10 dispersed
Bpe14g01174 Bpe-Chr14:8788881 Bpe10g00417 Bpe-Chr10:11627262 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01174 Bpe_Chr14 FPKM 0.0 0.0 0.97585 0.6015 310.715607 306.334656 267.152222 0.0 0.193963 0.0