Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01220 ATGGACCTTGTACCAATAGGAATTATATTGGCCGTGCTAACAAAACAGGTCATCAAAACGGCTATGGCAGCAAAAGACATTCTCATCGAGAAAGAGAGTTTTAAAACCCTCTCAAAGCATTTGTTCGACATCGAATCAGTCCTAAAGGAGTTGCAGCTTCAAGAGCTAAACGATTCTCAAGCAGCAAGACACGCTTTGGAATCTCTCGAATCAGATGTTAAACAAGCAAATAACTTGGTCGAAAAGTATCGAAACAGAAGCCGTTTTTATCTACTCTTCCGGTGTCGTCACATTGTCAACGAGGTCCAACAAGTCACCAGGAAAATCGGAGAGTCTTTGGCTGCCTTATCTCTGGCCAACAATGAGGTTCTCTCGAGGATTTCCGACCAAGTTACCAGGATTCAGAACGAGATGCAGAGGGTGGAATTTCAGGCCTCACACTTTCAGCTTCAGATTGTCGACAAATTGACTCAAGGGCTAAAAGACCACAAAATGGATCAGGGTTTCGCTAATAGCATACTCGAGGAAATCGCAAAAGTAGTTGGGGTCCCAGTGGAGCCTTTAGAGATAAGCAAAGAGCTTACAAGCCTCAAAAAGGAGAAAGAAGAAGCTGAATGTAGGAAGGAGAGGGCTGAAGCTCTTTTTTTGGATCAGGTTATTAAGGTTCTGTCTCTAGCCGATGCTGCCAGGGACTACCAAGAAATCATGCAGCAATATTTTCGAAGGGTTCGGGCTATAGAGCATTACGAGACGAAGGAAGAATATATATCGCCTCTCCATTCGTTTATTTGTCAAATTAATGGGACTGTGATGGTTGATCCGGTCAGCCTTTGCACTAACACCACTTGTGAGAGGGCTGCAATCCAAGCATGGTTTGAAAGTGGAAAAAGAACTGACCCTGAAACTGGTGATTTCCTGGAAGATACGTCTCTGAGGCCTAATTTTCAGCTGAGGCAGTCCATAGAAGAGTGGCAAGAACTTAACTACTGTCTGAAGATTCGATCATCGGAGGCGAAGTTATTGTCAGGCGAAGAGCGTTCTGTCGAAGAAGCCCTAATATTGATCCAAGATCTAACTAGAGAAAAGTCCATTTACAGAGACTGGATTACCATTGGAGGGCTCACAGATTTATTAGTCTTGATCCTTGGAATTTCACATAACAAAGACTTGAAGAGAAAAATTTTGATCACCTTGAAGGATGTCGTAGAAGGGCATGCACGAAATAAGGAAACATTAGAAACACAAGGGTGGGATCATATTATTTCCTGTCTGGGCTGTAACTCAGGCACAGAAAAGGCTGCAGTTGAATTAATAGACGAGTTACTACATGATACGTCGGGATGGAATTTGTCTGCTTGCCGGAAACTTGCAAAGCAGTCCAATGCCATTAATTTACTTGTCATCGTTCTAAAAGGACCCGAAAGAGAATCGGCTGGGATTGCAGAAAGAATCCTGATGAAGCTTTTCGACACTGATGAAGTGAGCATTTCCAGTGCTGCTATGTCAGGCTGGTACAATCCGCTCGTTGGTCAAATCATCAGAGTTTTTCAGGGCCAGAGTCGTCGGCATTGGCAATGGGTAAATATGGATATTACTGATTCAAATTTGAAGTTCCTTGGTGAGGAAGGGATAGTTCCTCCTTTACTCAAAATGCTATCTGGGAATATTGAGTCCAAAGAGTTGTCTTTGTCTGCTCTAACTAAACTGTCCGATGTCGACTCCAATAAAAAACTTATCGCAGCTGCTGGTGGAGTTCCTCCCATTCTAAAATTGATGTTTTCTTCCCACATGCCTTCAATAATTGTTGTTAAATGCTCTCACATCGTCGAGAAGATATCTTCCGGCAAAGATGCTATTACATTATTTGTGGATGGTGATGGGATTCAACTTGAAATGGAGTCCATATTGGCTGGTTTATTGGATCTAACCCCAAACTTAGCTTATAACATTCGAAGACCGACCCTTCGTGCACTTCTCGGCATCTTGAAGTCCGATTCAGAATTGGTCAAGAAAGTGATTCTCAAAGCCAGCGATCTGTTACTTGTACTTTCTCTTCTTGATGACTCTGACTCGGTAATTAGGGAGATTGCAATAAGTTTGCTCTTCCTTTTTTCACAACACGAGCCAGAGGGAGTAGTCAAGTACCTTCTGAAGCCGAGAAGGTTAGAGGCTTTGGTTGGGTTGTTAGAGAACGACAAGCCTGAAGTTCAGATTGCTTCTGCAGGCTTATTAGCCAACCTGCCAAAATCAGAGAGATCACTGACCATCAGGCTGATCGAATTGAACGGACTCGATTCAATTATCAATATCTTGAAGTTCGGGACTGATGAAGCGCAAGAAAATGCTTTGAGTGCTCTCTTCAGGTTCACCGATCCTACGAATATCGAATCACAGCGAATGTTAGTCGAAAGAGGAGCTTACCCTTTGTTCGTAAACTGTCTAACTTCCGGTTCTTCTACAGCTAAGGCTAGAGCCGCAGCTCTGATCGGTGATCTTTCCACTAGTACTCCAAAGCTTAGCAAGTCAGGCAGTTCAGCTGGTTGTTTATGCTTCAAATTTCGGAAGTCTGGTCTTCCGTATTGTATAGCACATTCTGGGATTTGTCTTGTAAATACGACATTTTGTCTGGTGCAGGCAAATGCTTTGCCGGGTTTGGTTGATCTTTTGAAAGAAGAGGTTCATGCTACTGCCTTCGAGGCGATCCGGACTCTTTCCACACTCATGTTAACCTCTCCTTTGAGTGGAGGTTTTGTTTTACACGATGCAAATGCCATAACTTTCACACTAAAAATTCTGAACTGGGGATCGGATTCTCTTAAAGTTGAGGCGATGGAGCTTTTGGAGAAGGTGTTTAGATCAAAGGATATGGTCGAATTCTATGGATCGAGAGCTCGACCGCTCCTTGCTGAGCTGAGTAGCAGAAGTATTGTTAGAGACGACGATCGACTCCTTGGGAAAGCTGCGCTGGTACTTGCGCACATCGAAAGATATTCAAAGTCATTTCAATTTGGTCATGCATGA 3021 43.33 MDLVPIGIILAVLTKQVIKTAMAAKDILIEKESFKTLSKHLFDIESVLKELQLQELNDSQAARHALESLESDVKQANNLVEKYRNRSRFYLLFRCRHIVNEVQQVTRKIGESLAALSLANNEVLSRISDQVTRIQNEMQRVEFQASHFQLQIVDKLTQGLKDHKMDQGFANSILEEIAKVVGVPVEPLEISKELTSLKKEKEEAECRKERAEALFLDQVIKVLSLADAARDYQEIMQQYFRRVRAIEHYETKEEYISPLHSFICQINGTVMVDPVSLCTNTTCERAAIQAWFESGKRTDPETGDFLEDTSLRPNFQLRQSIEEWQELNYCLKIRSSEAKLLSGEERSVEEALILIQDLTREKSIYRDWITIGGLTDLLVLILGISHNKDLKRKILITLKDVVEGHARNKETLETQGWDHIISCLGCNSGTEKAAVELIDELLHDTSGWNLSACRKLAKQSNAINLLVIVLKGPERESAGIAERILMKLFDTDEVSISSAAMSGWYNPLVGQIIRVFQGQSRRHWQWVNMDITDSNLKFLGEEGIVPPLLKMLSGNIESKELSLSALTKLSDVDSNKKLIAAAGGVPPILKLMFSSHMPSIIVVKCSHIVEKISSGKDAITLFVDGDGIQLEMESILAGLLDLTPNLAYNIRRPTLRALLGILKSDSELVKKVILKASDLLLVLSLLDDSDSVIREIAISLLFLFSQHEPEGVVKYLLKPRRLEALVGLLENDKPEVQIASAGLLANLPKSERSLTIRLIELNGLDSIINILKFGTDEAQENALSALFRFTDPTNIESQRMLVERGAYPLFVNCLTSGSSTAKARAAALIGDLSTSTPKLSKSGSSAGCLCFKFRKSGLPYCIAHSGICLVNTTFCLVQANALPGLVDLLKEEVHATAFEAIRTLSTLMLTSPLSGGFVLHDANAITFTLKILNWGSDSLKVEAMELLEKVFRSKDMVEFYGSRARPLLAELSSRSIVRDDDRLLGKAALVLAHIERYSKSFQFGHA 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9124844 9128129 - Bpe014583.1 Bpe14g01220 115529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01220 1006 Coils Coil 194 214 - -
Bpe14g01220 1006 Gene3D - 6 121 IPR036537 GO:0007166
Bpe14g01220 1006 Gene3D - 860 1002 IPR011989 -
Bpe14g01220 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 999 - -
Bpe14g01220 1006 SUPERFAMILY ARM repeat 340 835 IPR016024 -
Bpe14g01220 1006 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Bpe14g01220 1006 Coils Coil 59 86 - -
Bpe14g01220 1006 Pfam U-box domain 262 326 IPR003613 GO:0004842|GO:0016567
Bpe14g01220 1006 SUPERFAMILY RING/U-box 246 326 - -
Bpe14g01220 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 335 IPR013083 -
Bpe14g01220 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 999 - -
Bpe14g01220 1006 Coils Coil 341 361 - -
Bpe14g01220 1006 Gene3D - 338 849 IPR011989 -
Bpe14g01220 1006 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Bpe14g01220 1006 Coils Coil 124 144 - -
Bpe14g01220 1006 SMART arm_5 750 791 IPR000225 GO:0005515
Bpe14g01220 1006 SMART arm_5 532 571 IPR000225 GO:0005515
Bpe14g01220 1006 SMART arm_5 794 834 IPR000225 GO:0005515
Bpe14g01220 1006 SMART arm_5 869 906 IPR000225 GO:0005515
Bpe14g01220 1006 SMART arm_5 708 749 IPR000225 GO:0005515
Bpe14g01220 1006 SMART arm_5 572 614 IPR000225 GO:0005515
Bpe14g01220 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 584 IPR000225 GO:0005515
Bpe14g01220 1006 SUPERFAMILY ARM repeat 799 981 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01220 - - - qsu:111984141 1217.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00931 Bpe-Chr14:6938643 Bpe14g01220 Bpe-Chr14:9124844 1.20E-100 dispersed
Bpe14g01220 Bpe-Chr14:9124844 Bpe15g01394 Bpe-Chr15:21838377 5.72E-35 dispersed
Bpe14g01220 Bpe-Chr14:9124844 Bpe02g00304 Bpe-Chr2:2003848 1.69E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g592 . . . . . Bpe14g01220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00598 . . Bda13g00095 . . Bma02g00814 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018110 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01220 Bpe_Chr14 FPKM 17.694569 17.307589 5.804727 4.989719 24.353159 23.727524 23.69381 2.634957 2.27127 2.532967