Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01228 ATGAATGATGAAATTGGGCAGACAGATCCAGCAACTGAGTTACAGCTTGATCTGGCTTATTTGCATCAGTACAACGAAAACATATTGAACAGCGATTCAGGTGCAGGTGTAAATGCGGGTTCAATGGTTGACATTGCATTTGTCACCACTGATCCCCTGTCTGAATTAGTATGGTCTCCACATAAAGGTTTAAGTCTCAAATGTGCTGATTTTAGCTTTGGTAATAGAAAGCCTTCTATGTTAAGGGGTGTTGGACCAAGTAATATGAATCTTGCCCTCGCAGAGAGTATTACAGCTGAGAAGTCTTATTCCGAGAAACTAGTACAAGATAGAATTTTATCACCTCATTCACAGAATGAATGCAACAACAAAGATATATCAACTGGGTCAGACATGGGTGATATTGGTGCATCATTAAGCAGATCGGGGCATATCCTCGACAAAGGAATTAGTTGTGAGGCAGAAAAAATGAATAACACAGCTGGAGTCTCATTTCCATGCTTCAAACAAGAGGAGGATCTTCCTGACATTGTCGTAGAGGAAGTTGCTGATCCAATAATCACACAGATGGTTGAAGCAGCTGAAATGATAGAAAACAAGTCTTTGGTCTTGACAGGACATGTAAATGAAAGAAAAGCTGATGTCGTATTCGCTGAAAGAGATGATATTGAGCCTGTTATAGCACGACCTGAAAAACCTACTGATCTTACTGGAGAAAACAGTGTTGCAGGATGTGGCAAAATGATGATGGGTATTGATGATACTCTAACATCTAAAGCTCATGTGCTAGAGGAATGTCAACTTTCGGGTTCTCAGCCACAGAATCCAGATCCCTCGAGCTCACGGCCTTTAGAGAAACGGGAATCAACTGCAGAAAATGAGATGCAGAAATTAAATAATGAAAATGGTTGTGATGAGCCTGGGAAAATTGAAGCAGCAGATTCACTCCGCCACCAGCCAGTTGAAAAGTTCCAATCTATTGAAGAGTCTGTTGCTGCTGACTGTTCGCCTTCAAACAGCAGAATCCATAAGAAAAGAAAGAAAGCCAAGAAAAAGGCCTTGTTTGATGGATATGGTGATGGCAGAAATTTGAATGACAAAGGTGACAGCTATGAAAGCGTTGAAAGCTGCAACAGTGCAGAAATATTTTGTAGGGGAAAAAACATATGGAATGAGCAACAGTTGGTCGTGGAACGTCGTAGAGTTGAAAACCATATTCATGATACCACAAGGTCAACATCTGTTATAGGAAAAGACAGCTCTTTCATGATTTGGATATCAAATATGATGAAGGGGTTCCCAAAGTCAATTCCAGAGAAGGAATCTTCTCTTGCTCTTACCCATGGACATTCTGATAATGAACACAACGACTCTAACAAGGAATCTCTGATATGGAAGAAAAATCAAGACCTACAGCACCAGCGAATGGGTTTTCAATCAATTTTTCAGTCTTTGTATGGTGTGAGCACTAAGGGTCAACATTTATTGTCTCATAATGCCCATAACGAGGAAGAGGATAGATCTGAGGATTATATTAAAGAGGCCTATGATGCAGGTGCTACTCCATTGGCGTTCCATAAAGAGAACAGTAATTCTTGTGCACAAGTGATTCTTACAAGGCAGAACCTTAACAAATCTACATTGGGAAACAAAAATAATGAATCTGTATCAGGAAACAGTGCAGATGCCGCTATAAGGCCCAATGCTGGCATTCATGAGAGTCTGATGGCTGGGCCAGGAGAGAGGAGAGTTGCATGCAATGCTCCTCCTATAATTGGTGAGGGTAAATTTGAAACGAGCTCCAGTTCTTCGTTGCCCCGGAAGAGAAAGAGTGTTGAGAATACTGACTCTGCGGTACCATCTGAAGTAAAGACTAATCTCAGTTTAGGTAATGCAGGTAAACATCTTAAAAGCTTATGGATTACTCGGTTATCTATGAAAAGCTCGCAAGCGGTGGCAAATCTAGATTCTGAGGACCAAAACATAAATGACCATCTCCAGTGCGGAAGTCATATTCTGTGTTCTCAGAACCAGGTTGATTTTACTGGTGGACAAAAAGAGCAAACAAGCGATGAACCACATAGTATCTTGAAAGGAGAAATGCATAAATGTACTCTGTATTCTGAGTGTACAACTGGTTTTGATAGAATTGAAGGCCATAATGATCAGTCATTGACAAATAAGTTCAATCCTATGTTGCCTGCAACTAGATCCAGAAGGTCTGTCATGGCGTCTGTCTTTGCTAGGAGATTAGATGCCTTAAAACATATCCCATCAAACATAAGAGAAATTGGCACTGACGAAAGGATGATATGTTTCTTTTGTGGCTCAAGAGGTCATCATTTACAAGATTGTTCAAAAATAGCTGAAAGTGAAGTTGTTGAGCACCTTTCAAAGATTCCAAGCTTATTTGACGGGGCTGCTGAAGTCTCTTGCTTGTGCATTAGATGTTTTCAGCTCAATCACTGGGCTGTTTCTTGTCCTCAGAGTAGAGCTCAATATCATCCTGAATCTAATTGTTCTTTGGTTAATCATCTCGGGAATGGGGATAAGCAACCTTCAAATAGTGGGTTAAATACCAAGTTTCTAATTGGTGATAGTAGCAAACCTCAACCTCCTACGTGCATTAAAAATCATATTAATGATCCTGAACTGGATGATCATAACCCGAGAAGCAACCTAATACATAATAAGACCTCTGAACAACCGAGATCTATTGAGGACTCCAACGAAAGATTCGTGGCTTCAAATTATATGGAGAAAAAGGAATCCGAGATAGTTCAATTTACTACGATAGATGTACACGGAGTCTTTGATATGATAAAGAAGCTTCAATTGTCCCGCACAGACATTCTAAAATGGATTAACTCCAATATGTCACTGGTCAAACTTGAGGGTTTATTCTTGCGTCTACGGCTTGGAAAGTGGGAAAAAGGATGTGGAGGCACCGGATACCATGTGGCTTTTGTAACGGGGACACAGAATGCCAGAAATTCTATCTCCGTGAATGTCGGAGGCGTAGAATGCTTGACCCAAAGCCAGTCTATCTCCAATCACGATTTCCTTGAGGAGGAGCTGAAAGCATGGTGGCATGCAACATCAAAAGATAGAAACCAAGCTATAGTTGAAGCAGATTTGAAAGCCAAATTAAAGAAGAAAAGGCTTTTAGGTTTATAG 3177 40.51 MNDEIGQTDPATELQLDLAYLHQYNENILNSDSGAGVNAGSMVDIAFVTTDPLSELVWSPHKGLSLKCADFSFGNRKPSMLRGVGPSNMNLALAESITAEKSYSEKLVQDRILSPHSQNECNNKDISTGSDMGDIGASLSRSGHILDKGISCEAEKMNNTAGVSFPCFKQEEDLPDIVVEEVADPIITQMVEAAEMIENKSLVLTGHVNERKADVVFAERDDIEPVIARPEKPTDLTGENSVAGCGKMMMGIDDTLTSKAHVLEECQLSGSQPQNPDPSSSRPLEKRESTAENEMQKLNNENGCDEPGKIEAADSLRHQPVEKFQSIEESVAADCSPSNSRIHKKRKKAKKKALFDGYGDGRNLNDKGDSYESVESCNSAEIFCRGKNIWNEQQLVVERRRVENHIHDTTRSTSVIGKDSSFMIWISNMMKGFPKSIPEKESSLALTHGHSDNEHNDSNKESLIWKKNQDLQHQRMGFQSIFQSLYGVSTKGQHLLSHNAHNEEEDRSEDYIKEAYDAGATPLAFHKENSNSCAQVILTRQNLNKSTLGNKNNESVSGNSADAAIRPNAGIHESLMAGPGERRVACNAPPIIGEGKFETSSSSSLPRKRKSVENTDSAVPSEVKTNLSLGNAGKHLKSLWITRLSMKSSQAVANLDSEDQNINDHLQCGSHILCSQNQVDFTGGQKEQTSDEPHSILKGEMHKCTLYSECTTGFDRIEGHNDQSLTNKFNPMLPATRSRRSVMASVFARRLDALKHIPSNIREIGTDERMICFFCGSRGHHLQDCSKIAESEVVEHLSKIPSLFDGAAEVSCLCIRCFQLNHWAVSCPQSRAQYHPESNCSLVNHLGNGDKQPSNSGLNTKFLIGDSSKPQPPTCIKNHINDPELDDHNPRSNLIHNKTSEQPRSIEDSNERFVASNYMEKKESEIVQFTTIDVHGVFDMIKKLQLSRTDILKWINSNMSLVKLEGLFLRLRLGKWEKGCGGTGYHVAFVTGTQNARNSISVNVGGVECLTQSQSISNHDFLEEELKAWWHATSKDRNQAIVEADLKAKLKKKRLLGL 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9200173 9204683 - Bpe014589.1 Bpe14g01228 115537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01228 1058 MobiDBLite consensus disorder prediction 591 622 - -
Bpe14g01228 1058 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 56 1057 - -
Bpe14g01228 1058 SMART c2hcfinal6 771 787 IPR001878 GO:0003676|GO:0008270
Bpe14g01228 1058 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Bpe14g01228 1058 Pfam Plus-3 domain 941 1032 IPR004343 GO:0003677
Bpe14g01228 1058 MobiDBLite consensus disorder prediction 267 318 - -
Bpe14g01228 1058 ProSiteProfiles Zinc finger CCHC-type profile. 772 787 IPR001878 GO:0003676|GO:0008270
Bpe14g01228 1058 SMART rtf1 935 1035 IPR004343 GO:0003677
Bpe14g01228 1058 Gene3D - 937 1053 IPR036128 GO:0003677
Bpe14g01228 1058 Coils Coil 281 301 - -
Bpe14g01228 1058 Gene3D - 768 839 - -
Bpe14g01228 1058 ProSiteProfiles Plus3 domain profile. 935 1058 IPR004343 GO:0003677
Bpe14g01228 1058 PANTHER UNCHARACTERIZED 56 1057 - -
Bpe14g01228 1058 SUPERFAMILY Plus3-like 938 1051 IPR036128 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01228 - - - qsu:112027474 609.372
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00571 Bpe14g01228 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00571 Bpe-Chr13:12893030 Bpe14g01228 Bpe-Chr14:9200173 9.31E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01228 Bpe_Chr14 FPKM 34.845833 37.673172 20.42308 19.670113 12.150691 13.511723 15.140872 13.655438 11.582865 14.892315