Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01242 ATGGGCTTCTTCTCCTTCCTCGGTCGGGTCCTTTTCGCCTCCATTTTCATCCTATCCGCTTGGCAAATGTTTAATGAGTTTGGCGTGGATGGCGGACCTGCTGCCAAGGAGTTAATTCCCAAGTTTGCTAATGTCAAAAGAAATGTATCTTTCAAGTATGGCATTGATTTGCCAGATATTGACGCTAGACAATTGGTTGTTGTTTTTCTCACTCTCAAAGGGGTCGGAGGTCTTCTCTTTGTCTTTGGAAGCTCGGTGGGAGCTTATCTTCTGCTTCTCCACTTGGCAATTACCACTCCACTTCTCTATGATTTCTTCAATTATGCTCCTCACAAGCCTCAGTTCGGCATCCTATTAAATAATTTCTTGCAGAGTGCCGCCCTCTTCGGTGCATTGTTGTTTTTTATTGGGATGAAGAATTCGATCCCGAAAAAGACTATGAAGAAAAAGGGGCATAAAACAAAGACGGATTACCTAAAAACTGTCGTACCCTCACAGCTTATTTCCGAAAGAGGATCAAATTTGGTCGTTCTAAACCCAGGCTCTGCCAATATAAGGATAGGTCTAGCTTCACAGGATACTCCTTTAATTATTCCTCATTGCATTGCTCGGCATACTAATCAAGTCCCTGTGCGTAAGCGAAATGTTCAAGATCAGATGCTGAATTCACCAATTACAACTGCACAACACATGGACCGTGAGAAGGCATATGATAACATAGCGTCATTATTAAAGATACCGTTTTTGGATGAAGAGGTTGCCAGTAATTCCTTCCCACGAAAGATGGGACGTGTTGATGGAAATAATCCTGCAACCAATAGGAAGGAGACACCCTTCACTTGGGCTAATATATATGAGGAGGGGCCTGTTTCGTCTTTGGCTTCAGAGAGCTCTGGGTCGAAGGATGGGGTGAATGAGTCCTTGGATCAGGGTGAAAGTTGTGCTCCTGAAGGGCTTAATGCAAGCACACCTAAATACAAAGAGTTTATTTGTGGCGAGGATGCACTTAAAATATCCCCCATAGAGCCATATTGCCTACACCGTCCTATCCGCAGAGGTCATTTCAATATTTCACAACATTACTCTATGCAGCAGGTATTTGAGGACTTGCATGCTATATGGGACTGGATTTTGATGGAGAAGTTGCATATTTCTCACAATGAAAGAAGCATGTACTCTGCTGTAATCGTTGTGCCAGAATCATTTGACAATCGTGAAATAAAAGAGGTATTGACCATAGTCTTGAGAGACTTGCATTTTACCTCAGCAGTTGTACATCAGGAAGCTATTGCAACCGTTTTTGGGAATGGGTTATCTACTGCATGCATCGTCAATATGGGAGCTCAGGTGACATCAGTTACTTGCATCGAGGATGGAGTTGCTCTGCCTAATACTGAGAAGACTTTACCATTTGGTGGAGAGGATATATCAAGATGCCTTCTTTGGACTCAAAGACATCATCAGACATGGCCACCAATTCGAACTGACCTTTTGACAAAACCTATTGATCTCTTGATGCTTAACAGACTAAAAGAGTCGTATTGTGAGATTCAGGAAGGAGAGCTTGATGCTGTTGCGGTAGTTCACTCTTATGAAGATGGCGTTCCATCTGGATCTCACAAGACTAGGCTGACTTCCCTGAATGTACCGCCTATGGGTTTGTTCTACCCAATGCTTTTGGTACCTGATGTGTATCCTCCACCACCTCGTTCTTGGTTTCATGACTATGAGGATATGCTGGAGGATACGTGGCACATGGAATTTCCCAGAAGGCCAGATATATCAGATGGATTGTATGCTGGCTATAACGTTAATCTACCGATGTTGGAGAATTACCCAGTTTTTGCTTCTAAACCAAAGAAAGAAGAAAAGGTCGGAATTGCAGAAGCTATTACCAGCAGCATTCTTTCCACTGGACGTATAGACCTTCAAAGGAAATTGTTTTGTAGCATACTCTTGGTTGGTGGGGTGGCATTGACAAATGGTCTAGTTCCTGCAGTGGAGGATAGAGTTTTGCTTACAATCCCTGCAAATGAAGCAATTGATACTGTGGAGGTTTTGCCATCGAGAACCAATCCAGCTTTTGTGTCATGGAAAGGTGGAGCGATTCTGGGAGTTCTTGATGTTGGTCGAGAGGCTTGGATACATCGTGAGGACTGGATAAACAATGGAATCCATATAGGCAGTGGACGAAAATACAAAGATTCTTATTATCTTCAAGCACAAGCAATGTGCTACATAAACTCATGA 2250 42.98 MGFFSFLGRVLFASIFILSAWQMFNEFGVDGGPAAKELIPKFANVKRNVSFKYGIDLPDIDARQLVVVFLTLKGVGGLLFVFGSSVGAYLLLLHLAITTPLLYDFFNYAPHKPQFGILLNNFLQSAALFGALLFFIGMKNSIPKKTMKKKGHKTKTDYLKTVVPSQLISERGSNLVVLNPGSANIRIGLASQDTPLIIPHCIARHTNQVPVRKRNVQDQMLNSPITTAQHMDREKAYDNIASLLKIPFLDEEVASNSFPRKMGRVDGNNPATNRKETPFTWANIYEEGPVSSLASESSGSKDGVNESLDQGESCAPEGLNASTPKYKEFICGEDALKISPIEPYCLHRPIRRGHFNISQHYSMQQVFEDLHAIWDWILMEKLHISHNERSMYSAVIVVPESFDNREIKEVLTIVLRDLHFTSAVVHQEAIATVFGNGLSTACIVNMGAQVTSVTCIEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPPIRTDLLTKPIDLLMLNRLKESYCEIQEGELDAVAVVHSYEDGVPSGSHKTRLTSLNVPPMGLFYPMLLVPDVYPPPPRSWFHDYEDMLEDTWHMEFPRRPDISDGLYAGYNVNLPMLENYPVFASKPKKEEKVGIAEAITSSILSTGRIDLQRKLFCSILLVGGVALTNGLVPAVEDRVLLTIPANEAIDTVEVLPSRTNPAFVSWKGGAILGVLDVGREAWIHREDWINNGIHIGSGRKYKDSYYLQAQAMCYINS 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9350181 9367859 - Bpe014603.1 Bpe14g01242 115551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01242 749 PANTHER ACTIN-RELATED PROTEIN 8 158 732 IPR027668 GO:0006338|GO:0031011
Bpe14g01242 749 PANTHER ACTIN 158 732 IPR004000 -
Bpe14g01242 749 MobiDBLite consensus disorder prediction 292 317 - -
Bpe14g01242 749 Pfam Actin 174 726 IPR004000 -
Bpe14g01242 749 Gene3D - 578 729 - -
Bpe14g01242 749 Gene3D Actin; Chain A, domain 4 458 560 - -
Bpe14g01242 749 Gene3D - 300 455 - -
Bpe14g01242 749 Gene3D - 167 286 - -
Bpe14g01242 749 MobiDBLite consensus disorder prediction 292 307 - -
Bpe14g01242 749 Pfam HR-like lesion-inducing 1 138 IPR008637 -
Bpe14g01242 749 SUPERFAMILY Actin-like ATPase domain 437 728 IPR043129 -
Bpe14g01242 749 SUPERFAMILY Actin-like ATPase domain 173 444 IPR043129 -
Bpe14g01242 749 SMART actin_3 173 737 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01242 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - jre:108986152 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01242 Bpe-Chr14:9350181 Bpe07g00726 Bpe-Chr7:13806662 8.61E-14 dispersed
Bpe14g01242 Bpe-Chr14:9350181 Bpe14g01243 Bpe-Chr14:9369540 7.15E-38 tandem
Bpe13g00565 Bpe-Chr13:12835136 Bpe14g01242 Bpe-Chr14:9350181 6.98E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g649 . . . . . Bpe14g01242 . . . . . . Car06g01148 . . Cpe08g00323 Cpe03g01507 . . . . . . . . . . . . . . . . . . . . . Cme06g00511 Blo02g00729 . . Bda13g00075 . . Bma02g00795 . . . . . . . . . . . . . . . . . Cla05g00459 Cam05g0500 Cec05g0514 Cco05g0514 Clacu05g0501 Cmu05g0477 Cre05g0541 . Csa03g01232 Chy06g00485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01242 Bpe_Chr14 FPKM 41.393616 37.994362 46.775314 42.76757 25.247749 21.877165 29.517691 55.808651 48.598827 60.044151