Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01248 ATGCAACAAGCCCAAAAACAAGCATTCTCATACGGTCAAAATTTTGGGGGTGGAGGAACAGGGTTGGAGATGGAAGCTGCTGCTCTTGATGGCATTATTGCTAGGCTTCTAGAAGTGAGAGGAAGGCCAGGAAAACAAGTGCAGCTTTTGGAGTCTGAGATCAGCAAGCTCTGTCTTGTTTCCAAGGCTATTTTCTTGAGGCAGCCTAATCTCCTAGAGCTCGAGGCCCCAATCAACATCTGTGGAGATATTCACGGCCAATATTCAGATCTTCTCCGCCTGTTTGAGTATGGTGGACTACCTCCTCACTCAAACTATCTATTTTTGGGGGACTATGTAGATCGAGGAAAGCAAAGCCTAGAAACAATATGCCTACTCCTTGCATACAAAATAAAATACCCAGAGAATTTCTTCCTTCTGCGAGGAAACCACGAATGTGCATCTGTCAACAAGATCTATGGATTTTACGATGAATGCAAAAGAAGATACAGTGTGAGACTCTGGAAAGTCTTCACAGAGTGTTTCAACTGCATTCCTGTGGCTGCTTTGATAGACGAGAAAATATTGTGCATGCATGGTGGGCTTTCTCCAGACTTGTATGATTTGGATCAGCTGAGGCGGCTGAAGAGACCGACAGACGTGCCAGAAACAGGCCTGCTGTGCGACCTTCTGTGGTCGGATCCTGCCAAGGAGGTGAAAGGATGGGGCCCGAGCGAGAGGGGTATTTCCTACACCTTTGGTTCGGACAAAGTGGCTGAGTTTTTGAGAAAGCAGGATCTTGATTTAATTTGTAGAGCTCACCAGGTTGTTGAGGATGGATACGAGTTCTTCGCAAACAGAAGGCTTGTCACCATCTTTTCTGCTCCGAATTACTGTGGAGAATTCGACAATGCTGGGGCAATGATGAGTGTGGATGAGACTCTCATGTGTTCTTTCCAAATTTTAAAACCTGCAGATAAGAAACCCAGATTCGGATTTGGCACCTTGACAAATCCGAGAGCGGGCAGTACTCAATCTAAAGTTAAGAATTTACAGCTATGGTGA 1044 45.5 MQQAQKQAFSYGQNFGGGGTGLEMEAAALDGIIARLLEVRGRPGKQVQLLESEISKLCLVSKAIFLRQPNLLELEAPINICGDIHGQYSDLLRLFEYGGLPPHSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNKIYGFYDECKRRYSVRLWKVFTECFNCIPVAALIDEKILCMHGGLSPDLYDLDQLRRLKRPTDVPETGLLCDLLWSDPAKEVKGWGPSERGISYTFGSDKVAEFLRKQDLDLICRAHQVVEDGYEFFANRRLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPRFGFGTLTNPRAGSTQSKVKNLQLW 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9422655 9424848 + Bpe014608.1 Bpe14g01248 115557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01248 347 SMART pp2a_7 49 319 IPR006186 GO:0016787
Bpe14g01248 347 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 24 340 - -
Bpe14g01248 347 Pfam Calcineurin-like phosphoesterase 78 269 IPR004843 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 139 163 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 259 279 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 106 133 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 202 229 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 173 199 IPR006186 GO:0016787
Bpe14g01248 347 PRINTS Serine/threonine phosphatase family signature 281 297 IPR006186 GO:0016787
Bpe14g01248 347 CDD MPP_PP1_PPKL 29 317 - -
Bpe14g01248 347 Gene3D - 21 328 IPR029052 -
Bpe14g01248 347 Pfam Serine-threonine protein phosphatase N-terminal domain 29 75 IPR031675 -
Bpe14g01248 347 ProSitePatterns Serine/threonine specific protein phosphatases signature. 140 145 IPR006186 GO:0016787
Bpe14g01248 347 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 24 340 - -
Bpe14g01248 347 SUPERFAMILY Metallo-dependent phosphatases 41 322 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01248 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - ini:109175833 579.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00561 Bpe14g01248 CCT
Bpe13g00561 Bpe14g01248 ECH
Bpe04g01007 Bpe14g01248 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00665 Bpe-Chr9:15284581 Bpe14g01248 Bpe-Chr14:9422655 0 dispersed
Bpe11g00745 Bpe-Chr11:5657799 Bpe14g01248 Bpe-Chr14:9422655 0 dispersed
Bpe14g01248 Bpe-Chr14:9422655 Bpe15g01131 Bpe-Chr15:20352174 0 dispersed
Bpe07g00512 Bpe-Chr7:10550872 Bpe14g01248 Bpe-Chr14:9422655 4.63E-66 transposed
Bpe13g00561 Bpe-Chr13:12813311 Bpe14g01248 Bpe-Chr14:9422655 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01248 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.168276 0.226281 7.386788 7.435905 7.396207