Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01253 ATGGGAAGATCTGAATCAGTAATGATGGGCAGTATTAATAAGACCATAGTTTGGTTTAGGAGAGATCTCAGAATTGAGGACAATCCTGCTTTAGCTACCGCTGCAAGGAACGGTCGTGTTCTTCCCGTCTATATATGGTGTCCTAAAGAAGAAGGTCAATTCTACCCAGGCCGAGTCTCGAGATGGTGGCTTAAACAGTCTCTGGCTCACCTCCAACAGTCTTTGAAGTCTCTTGGTGCTGAACTGGTCCTAATGAAAACAGAGAGTACATATTCTGCTTTGTTAGTCTGTATCAACGCCACTGGCGCAAAGAGAATCGTCTTTAATCGCCTCTACGATCCTATTTCGGTTGTTCGAGACCACAGCTTGAAACAAAAACTAGCGGAACTTGGTGTGTCTGTGGAGACTTGTAATGCAGATCTGTTGTATGAACCATGGGAGGTTTACGATGAAAATGGCCTTGCCTATACAACCTTTGACACATATTGGGACAGGTGCTTGCAGATGCATAATGAACCTGCTTCTAGTCTTCCTCCATGGAAATTGGTACCAGCTGAAGGAGAGGTTAAAAAATGTTGCGTTGAGGAATTGGGTCTTGAAGATGAATCAGAGAAATCAAGCAACGACTTATTGAGCAGAGCTTGGTCTCCAGGTTGGAGCAATGCCGATAATGCTCTGACAGAATTTGTGGAACATCATTTACACACATACTCAAAGAAAAGGCTAGAAGTTGGGGTGTGCTCCACCTCACTTTTATCTCCATATCTTCATTTCGGAGAACTAAGTATTCGAAAAATATTTCACCTGGTGAGAATGAAGCAGATATTATGGATAAGAGAAAGAAATTCAGTAGCTGAGGAGAGTGTGACTCTTTATCTCAGGGCCATCGGGCTTCGAGAATATGCTCGATATTTATGTTTTAACTTCCCTTTCACGAACGAAAGATCGTTAATGAGTAACTTAAATTTCCTTCCTTGGAATGCCAGCGAAACCAATTTCAAGGTCTGGAGACAAGGCCGAACAGGATACCCATTGGTCGATGCAGGGATGAGAGAGCTATGGGCAACTGGTTGGATACACAACAAAATAAGAGTCATTGTTTCTAGTTTTGCAGTGAAAGTCTTGCTTCTTCCATGGAAATGGGGTATGAAGTATTTTTGGGACACCCTTTTGGATGCTGATTTGGAAAGTGATATACTTGGTTGGCAGTATATTTCGGGTAGTTTACCAGATGGTCACGAGCTTGATCGACTGGACAGTCCACAGATTCAAGGTGCGAAATTTGATCCTGAAGGAGAATATGTGAGGCTCTGGTTACCTGAGCTAGTGCGATTGCCCACTGAGTGGATTCATCATCCATGGGAGGCACCGTCTTCCGTGCTGAAAGCTTCTGGGGTAGAGCTGGGTACAAATTATCCAAAACCTATAATTGATCTTGATTTGGCTAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGAAATGGAAGCAACTATGAAGGCTGCAAACTCAAATTCTATGACAGAAATGGTTGTGGACAATGTGGACGAAATTGAAAATCAAAATATTCCAAAGGTGGTTATAAAGGAGCAGATTTGTCCTTCTTGTTCTTCTATCGATCAGAGGGTGCCAAGCTCTGGGAACATTGGCATGACGAGGAAGCGAACGACTTATCTCAAACAAGAGAAAGAAAGGAAACTCCCTGAGATTATTTGCAATAAGAAAGGTGTCAATGAGATGTCCAAAATAGAAGAAGATGTGTGCTCTACAGCAGAATCTTCATCAGCTAAAAAACAAACTATCTCCAGGACTTCATTTGCTGTTCCTCAATACTATTCTACATCAAAAGAGCATGTCTTCTCAGACAGTGAGACTTCTCGATGGAGGAACTGA 1896 42.3 MGRSESVMMGSINKTIVWFRRDLRIEDNPALATAARNGRVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLQQSLKSLGAELVLMKTESTYSALLVCINATGAKRIVFNRLYDPISVVRDHSLKQKLAELGVSVETCNADLLYEPWEVYDENGLAYTTFDTYWDRCLQMHNEPASSLPPWKLVPAEGEVKKCCVEELGLEDESEKSSNDLLSRAWSPGWSNADNALTEFVEHHLHTYSKKRLEVGVCSTSLLSPYLHFGELSIRKIFHLVRMKQILWIRERNSVAEESVTLYLRAIGLREYARYLCFNFPFTNERSLMSNLNFLPWNASETNFKVWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPQIQGAKFDPEGEYVRLWLPELVRLPTEWIHHPWEAPSSVLKASGVELGTNYPKPIIDLDLARQNLTEAKFKMWEMEATMKAANSNSMTEMVVDNVDEIENQNIPKVVIKEQICPSCSSIDQRVPSSGNIGMTRKRTTYLKQEKERKLPEIICNKKGVNEMSKIEEDVCSTAESSSAKKQTISRTSFAVPQYYSTSKEHVFSDSETSRWRN 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9473216 9476057 - Bpe014613.1 Bpe14g01253 115562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01253 631 Gene3D HUPs 16 215 IPR014729 -
Bpe14g01253 631 PANTHER CRYPTOCHROME 13 583 IPR002081 -
Bpe14g01253 631 Gene3D - 142 302 - -
Bpe14g01253 631 PRINTS DNA photolyase signature 361 379 IPR002081 -
Bpe14g01253 631 PRINTS DNA photolyase signature 341 357 IPR002081 -
Bpe14g01253 631 ProSitePatterns DNA photolyases class 1 signature 1. 341 353 IPR018394 -
Bpe14g01253 631 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 15 185 IPR036155 -
Bpe14g01253 631 PANTHER CRYPTOCHROME 2B APOPROTEIN 13 583 - -
Bpe14g01253 631 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 202 496 IPR036134 -
Bpe14g01253 631 Pfam DNA photolyase 15 175 IPR006050 -
Bpe14g01253 631 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 310 511 - -
Bpe14g01253 631 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 13 142 IPR006050 -
Bpe14g01253 631 Pfam FAD binding domain of DNA photolyase 292 488 IPR005101 -
Bpe14g01253 631 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 14 489 IPR014134 GO:0009785|GO:0009882
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01253 K12119 CRY2; cryptochrome 2 - pop:18102473 919.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00558 Bpe14g01253 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00618 Bpe-Chr10:12986116 Bpe14g01253 Bpe-Chr14:9473216 3.51E-46 transposed
Bpe13g00558 Bpe-Chr13:12798137 Bpe14g01253 Bpe-Chr14:9473216 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01253 Bpe_Chr14 FPKM 8.180099 8.511521 7.287881 6.716377 11.659723 10.001184 11.448612 19.387129 18.272573 18.854494