Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01254 ATGGGCGTAGCCGACCACAGCAAAAGAACATTTATGGAACTTCAAAGGAAGAAGGTGCACCGTTATGTGATTTTTAAGATTGACGAAATGAAGAAAGAAGTAGTGGTGGAGAAGACTGGAGGACCAGCCGAGAGCTATGATGATTTCTGTGTGTCGTTGCCTGAAAACGACTGTCGGTATGCGGTTTATGACTTCGATTATGTGACTACCGATAACTGCCAAAAGAGCAAGATCTTCTTTATAGCATGGTCACCCTCCGTATCCCGAGTTCGTTCGAAGATGCTGTATGCAACATCGAAGGACAGGTTCAGAAGGGAATTGGAGGGCATCCATTATGAGATCCAGGCCACCGACGAAACCGAGATGGATCTTGAAGTCCTTAGAGACCGAGCAAACTGA 399 46.12 MGVADHSKRTFMELQRKKVHRYVIFKIDEMKKEVVVEKTGGPAESYDDFCVSLPENDCRYAVYDFDYVTTDNCQKSKIFFIAWSPSVSRVRSKMLYATSKDRFRRELEGIHYEIQATDETEMDLEVLRDRAN 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9477471 9477954 - Bpe014614.1 Bpe14g01254 115563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01254 132 ProSiteProfiles ADF-H domain profile. 1 132 IPR002108 GO:0003779
Bpe14g01254 132 CDD ADF_cofilin_like 3 131 IPR017904 GO:0015629|GO:0030042
Bpe14g01254 132 Pfam Cofilin/tropomyosin-type actin-binding protein 9 129 IPR002108 GO:0003779
Bpe14g01254 132 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 1 131 - -
Bpe14g01254 132 SMART adf_2 5 132 IPR002108 GO:0003779
Bpe14g01254 132 PANTHER COFILIN-RELATED 1 131 IPR017904 GO:0015629|GO:0030042
Bpe14g01254 132 Gene3D Severin 1 132 IPR029006 -
Bpe14g01254 132 SUPERFAMILY Actin depolymerizing proteins 2 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01254 K05765 CFL; cofilin - qsu:112026343 247.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01843 Bpe-Chr4:23683615 Bpe14g01254 Bpe-Chr14:9477471 1.60E-58 dispersed
Bpe10g00372 Bpe-Chr10:11288615 Bpe14g01254 Bpe-Chr14:9477471 2.20E-67 dispersed
Bpe13g00953 Bpe-Chr13:15423528 Bpe14g01254 Bpe-Chr14:9477471 1.40E-57 dispersed
Bpe14g01335 Bpe-Chr14:10600998 Bpe14g01254 Bpe-Chr14:9477471 4.85E-61 transposed
Bpe14g01254 Bpe-Chr14:9477471 Bpe06g00426 Bpe-Chr6:15650716 1.43E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g705 . . . . . Bpe14g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00063 . . Bma02g00783 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003181 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 2 3 2 1 1 1 1 2 1 1 2 2 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01254 Bpe_Chr14 FPKM 35.400051 38.742451 53.421864 52.089241 20.837591 21.24958 21.57749 23.930702 23.974577 22.391161