Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01276 AAAGTTTCCGGTGAGGTTCCGGAAGAGCCAGTTGTCTCAACGAAATCCGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCACGTTTTGGACTATGGAAAATGCCCAATTACTGGGGAATCACTAACCATGGATGATGTTGTTCCAATTAAAACTGGGAAGATAGTGAAGCCCAGACCTGTTCAAGCGGCTAGTATCCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGCTTAATGCTTTCTAATTTTGCGCTTGAGCAACAATTGCATACTGCCAGACAAGAGCTAAGCCATGCTTTATACCAGCATGATGCTGCCTGTCGTGTGATTGCGAGGCTTAAAAAAGAAAGGGATGAAGCTCGATCATTACTTGCACAAGCTGAAAGGCAAATGCCTTCTGTAACATCCACACTAATAGTTGCTGCTTCTTCTGTTCATAGCAATGGGAAACGAGGTGCTGAAGATGAAGAATCTGGCCCTGATGGAAAGAGAATACGCCCTGGAATTACTACAAGTATTATCTCTGAGCTTACAGACTGTAATGCTGCACTCTCACAGCAGAGGAAGAAGCGGCAGATACCAGCAACTTTGGCTCCTGTTGAGCTTTTGGAGAGCTATACCCAGATATCTAGTCACCCACTCCATAAAACAAGCAAACCTGGCATTTTATCTCTTGATATTCATTATGGCAAGGACATAGTTGCCACTGGAGGGCTTGACACCAATGCAGTAATTTTTGATCGACCATCTGGACAGATTTTATCTACACTTAGCGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGCACGAGATGCATTATTCTTAAGTGGTTCGGCTGATAAGACTGTTCGTGTATGGCAAGGCTCTGATGATGGGAATTATACTTGTACGCATGTCTTGAAGGATCACACTGCTGAGGTACAAGCGGTTACAGTTCATGCTACGAACAACTACTTTGTGACTGCCTCTCTTGATAACACATGGTGTTTCTATGAACTTTCTTCTGGATTATGTCTAGCACAGGTTGCAGACACTTCAGGAACAGAGGGCTACACATCGGCAGCCTTTCATCCTGATGGTCTTATCCTTGGAACAGGCACATCTGAGGCTCTTGTTAAGATTTGGGATGTGAAAAGTCAGACAAATGTTGCCAGATTTGATGGACACGTTGGGGCTGTTACTGCAATATCTTTCTCAGAGAACGGTTACTTCCTTGCAACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTAAAGAACTTCCGCACATTTTCTCCATATGATTCAGATACACCGACAAACTCTGTTGAATTCGACCAAAGTGGAAGTTACCTAGCAATTGCAGGATCAGATTTAAGGGTTTACCAAGTTGCGAACGTGAAATCTGAATGGAAGTGCATTAAGACTATCCCAGATTTGTCGGGAACAGGTAAAGCAACGTGCATCAAATTCGGTCTAGATGGAAAATACTTAGCTGTAGGATCGATGGACCGAAACCTCCGGATATTTGGTTTGCCGGGAGAAGATGGTCTAATGGAGTCATAG 1566 43.87 KVSGEVPEEPVVSTKSGLLFEKRLIERHVLDYGKCPITGESLTMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPSVTSTLIVAASSVHSNGKRGAEDEESGPDGKRIRPGITTSIISELTDCNAALSQQRKKRQIPATLAPVELLESYTQISSHPLHKTSKPGILSLDIHYGKDIVATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVARDALFLSGSADKTVRVWQGSDDGNYTCTHVLKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPTNSVEFDQSGSYLAIAGSDLRVYQVANVKSEWKCIKTIPDLSGTGKATCIKFGLDGKYLAVGSMDRNLRIFGLPGEDGLMES 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9652062 9659930 + Bpe014633.1 Bpe14g01276 115585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01276 521 ProSiteProfiles U-box domain profile. 1 67 IPR003613 GO:0004842|GO:0016567
Bpe14g01276 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 521 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bpe14g01276 521 SMART WD40_4 207 249 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 383 421 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 297 336 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 339 380 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 424 463 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 470 511 IPR001680 GO:0005515
Bpe14g01276 521 SMART WD40_4 252 291 IPR001680 GO:0005515
Bpe14g01276 521 Gene3D - 199 512 IPR015943 GO:0005515
Bpe14g01276 521 SUPERFAMILY WD40 repeat-like 221 510 IPR036322 GO:0005515
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Bpe14g01276 521 CDD WD40 223 510 - -
Bpe14g01276 521 CDD RING-Ubox_PRP19 2 51 - -
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Bpe14g01276 521 MobiDBLite consensus disorder prediction 151 165 - -
Bpe14g01276 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
Bpe14g01276 521 SUPERFAMILY RING/U-box 2 50 - -
Bpe14g01276 521 Coils Coil 112 132 - -
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Bpe14g01276 521 SMART Ubox_2 3 63 IPR003613 GO:0004842|GO:0016567
Bpe14g01276 521 MobiDBLite consensus disorder prediction 147 169 - -
Bpe14g01276 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Bpe14g01276 521 Pfam Prp19/Pso4-like 63 128 IPR013915 -
Bpe14g01276 521 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515
Bpe14g01276 521 Pfam WD domain, G-beta repeat 472 510 IPR001680 GO:0005515
Bpe14g01276 521 Pfam WD domain, G-beta repeat 253 290 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00538 Bpe14g01276 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00582 Bpe-Chr4:3717988 Bpe14g01276 Bpe-Chr14:9652062 1.23E-10 dispersed
Bpe04g01656 Bpe-Chr4:22666371 Bpe14g01276 Bpe-Chr14:9652062 2.79E-10 dispersed
Bpe14g01276 Bpe-Chr14:9652062 Bpe15g00937 Bpe-Chr15:19144873 2.74E-09 dispersed
Bpe13g00538 Bpe-Chr13:12699788 Bpe14g01276 Bpe-Chr14:9652062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01276 K10599 - vvi:100249408 905.205