Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01284 ATGGCGACCCCTTTCCCCATTCCCGTGACTGCTTCTCAGGTAGGAACGTACTTTGTGGGGCAGTACTATCAGGTGCTTCAACAGCAGCCGGACTTTGCGTTTCAGTTCTACTCTGACTCAAGCACCATGCTTCGCATTGACGGCAGTTTTAGAGAGACTGCCACTGCAATGCTTCAAATCCATTCTGTGATTATGTCACTTGGCTATACTGGAATTGAAATAAAGACGGTCAATGCTCTTGAATCATGGAATGGAGGTGTTATTGTCATGGTGTCTGGCTCTGTTCAATTGAAGAATTTCACCCAGAGAAAGTTTATGGAAACATTTTTCCTTGCACCTCAGGAGAAGGGTTATTTTGTTTTGAATGACATTTTTCATTATGCTGATGAGGAGGCAATTCTTCATCATCCCACATTACTATTACCTCAGAGCAGTCTTGTTTCCAAGATCAATGCTTCTACAACAATTCAAGACACAGTGCCTAACTATATGTTAGGTGGAGAAATTCAGGCGAGAGATTTTGCAGCACCTGTTGTCAAAGAAAATGGTGCAGTTCCTAATTACAGTTTGATCGAGCAGCATATTCACGAAGTTAGTGGAACTGACAACGTTATGGAAGACAATGCTGTGGAAGAATCAAACCCTTCACATCAAAATACGATGCATGTTCCACAAGACAGTTTGCCTGCTTCTGCAGTAGAGCCTATTGGGGAGCCTCAAAAGCATACTTATGCTTCTATTTTACTAGTCGCTAAAGGGCAATCTCCACCTTCATCTGCCCCCAGTATTTCAGTGAATAAGAACGCTCAAATTGTTTTGGAGCAAAATCACATTCTGCCATCCGCCACTCAGCAATCTTTTACATCTCCACATGAATTTGAGATGGACGACACAACAGAAGAACTTCCCTTAATAGAAGAGGATGAAGGAGAAATAAAGTCCGTATATGTCAGAAACTTGCCACCTACTGTGTCTGTTTCTGACGTGGAGGAGGAATTTAAGCATTTTGGGAAGCTCAGTTCAGATGGGGTTGTTATTAGAAGTCGCAAGGATGTTGGTGTCTGCTATGCATTTGTTGAATTTGAAGAAGTCAGTGGTGTTCAAAACGCAATCAAGGTGGGTACAGCACAGGTTGCTGGACGACAAGTGTACATTGAAGAGAGGAGACCAAACAGCAACATTCCATCTCGAGGAGGAAGAAGGGGTAGAGGCAAAGGCAGCTACCAATTAGATTCATCAAGAAGTCGATTCCCTCCTCGTAGTTATATGCAGGGAGGGATTTCCAATGGAAGCGATCGAGATTATACAAGACCAAGGGGAAATGGGTTTTATCGACCGACTATACGGCACGATCGAGTAATCAGAAGCTACCAGCCATCAAGAAATGGAGAGAATCCCTCTGACTCAACATGA 1413 43.31 MATPFPIPVTASQVGTYFVGQYYQVLQQQPDFAFQFYSDSSTMLRIDGSFRETATAMLQIHSVIMSLGYTGIEIKTVNALESWNGGVIVMVSGSVQLKNFTQRKFMETFFLAPQEKGYFVLNDIFHYADEEAILHHPTLLLPQSSLVSKINASTTIQDTVPNYMLGGEIQARDFAAPVVKENGAVPNYSLIEQHIHEVSGTDNVMEDNAVEESNPSHQNTMHVPQDSLPASAVEPIGEPQKHTYASILLVAKGQSPPSSAPSISVNKNAQIVLEQNHILPSATQQSFTSPHEFEMDDTTEELPLIEEDEGEIKSVYVRNLPPTVSVSDVEEEFKHFGKLSSDGVVIRSRKDVGVCYAFVEFEEVSGVQNAIKVGTAQVAGRQVYIEERRPNSNIPSRGGRRGRGKGSYQLDSSRSRFPPRSYMQGGISNGSDRDYTRPRGNGFYRPTIRHDRVIRSYQPSRNGENPSDST 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9711304 9714285 + Bpe014641.1 Bpe14g01284 115593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01284 470 SUPERFAMILY NTF2-like 10 127 IPR032710 -
Bpe14g01284 470 PANTHER OS02G0131700 PROTEIN 8 454 - -
Bpe14g01284 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Bpe14g01284 470 MobiDBLite consensus disorder prediction 387 470 - -
Bpe14g01284 470 MobiDBLite consensus disorder prediction 408 435 - -
Bpe14g01284 470 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 127 IPR018222 -
Bpe14g01284 470 SMART rrm1_1 314 386 IPR000504 GO:0003723
Bpe14g01284 470 CDD RRM_SF 315 386 - -
Bpe14g01284 470 CDD NTF2 10 129 IPR018222 -
Bpe14g01284 470 Gene3D - 288 441 IPR012677 -
Bpe14g01284 470 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 454 IPR039539 -
Bpe14g01284 470 SUPERFAMILY RNA-binding domain, RBD 306 417 IPR035979 GO:0003676
Bpe14g01284 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Bpe14g01284 470 Pfam Nuclear transport factor 2 (NTF2) domain 14 127 IPR002075 -
Bpe14g01284 470 Gene3D - 8 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01284 - - - zju:107422464 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00297 Bpe-Chr10:10386183 Bpe14g01284 Bpe-Chr14:9711304 2.80E-124 dispersed
Bpe14g01284 Bpe-Chr14:9711304 Bpe15g00576 Bpe-Chr15:16751612 1.83E-28 dispersed
Bpe14g01284 Bpe-Chr14:9711304 Bpe07g00754 Bpe-Chr7:14073664 3.55E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01284 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0