Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01287 AGTCTTAAAGAGGGAAATCTTAATTGGGAGATGCTACAATTAAAATCACGGTTTCCTCGAGAAGTTTTACTATGCAGAGTTGGAGATTTTTATGAAGCCATCGGACTGGATGCTTGTATCCTTGTTGAATATGCTGGTTTGAATCCTTTCGGGGGTCAACGGTCAGATAGCATTCCAAGAGCTGGGTGCCCAGTTGTGAATCTTCGACAGACCTTGGATGATCTGACTCGTAATGGGTGGTCAGTGTGCATTGTGGAAGAAGTTCAAGGTCCAACACAGGCTCGTTCTCGCAAAGGTCGTTTTATATCAGGGCATGCACATCCTGGTAGTCCTTATGTCTTTGGACTTGTTGGGGTTAACCACGAACTTGAGTTTCCAGAGCCAATGCCAGTTGTTGGAATCTCTAGATCTGCAAAGGGCTATTGCATTAACTTTGTTCTAGAGACTATGAAGACATATTCATCAGAGGATGGCTTGACTGAAGAGGCATTGGTTACAAAATTACGTACTTGTCAGTACCATTATTTATTTATGCATACATCACTAAGGCATAATTCCTCAGGTACTTGCCGATGGGGAGAATTTGGTGAGGGGGGCCTATTGTGGGGAGAATGCAATGCCAGACATTTTGAATGGTTTGATGGCAACCCGTTGACTGAACTTTTGTTAAAGGTTAAAGAGCTGTATGGGCTTGGGGATGAAGTTCCATTTCGAAATGTTACTATACCTTCAGCAAATAAACCGCGATCTTTAACCTTAGGAACAGCTACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTATTAAAGGTGTTTCTTCCATCAAATTGTGCTGGGCTACCTGCATTGTATATTAGAGATCTGCTTCTCAATCCTCCGGCTTATGAAACTGCATTGACGATTCAAGAAACTTGCAAACTTATGAGCAGTGTTACATGTTCAATCCCGGAGTTCACTTGTGTTTCGCCTCCTAAGCTAGTAAAACTATTGGAACTAAAGGAGGCCAATCATATAGAGTTTTGTAGAATGAAAAATGTACTGGATGAAATACTACACATGTATAACAATTCTGAGCTAGAGAAAATCTTGAAACTTCTGATGAATCCTACAGAGATGGCAACTGGCCTAAAAATTGACTTCAACGCCTTTGTTGATGAATGTGAATGCACGTCTAGTAGAATTTCTGAAATGATCTTTCTAGATGGCGAACATGACCAGAAAATCAGTTCTTTCCCTCTTATTCCTGGTGACTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGCGGGCTCATGTAGAGGAAGCCTTTGATGAAGTAGAGAATGCAGCTGAGACTTTATCTCTGGCAGTTCGTGAAGATTTCCTCCCAATAGTTTCAAGATTAAAGGCTATTACAGCACCACTTGGTGGTCCAAAGGGAGAGATACTATATTCTCGAGAGCATGAAGCTGTTTGGTTTAAGGGAAAACGATTTGCACCAGCTGTTTGGGCTGGCACCCATGGAGAAGAACAGATTAAGCAACTTAAACCTGCACTGGATTCCAAAGGTAAAAAGGTTGGAGAAGAATGGTTTACCACAGTGAAGGTGGAGGATGCCTTAACAAGGTGTAGATTTATACTAATTCATGGACACAAATCTCATTTTTTTTCATATATTTGTTGTTCATTATGTTTAGATATCCAAAAGAAATTGTCAGGAATATTGAATTACTATTTCTTTATTTTTTCCAGGTACCACGAAGCAAGTGCCAAGGCAAAAGTATCAGTTGTATGTTTGTTGAGGCAACTTTCTTCGGTATTGCAAGCTAAAATCAATATCCTTGTGTTTGCTTCCACGCTGCTTGTTATTGCAAAGGCTTTATTTGCTCACGCGAGTGAAGGGATGAGGAGGAGATGGGTTTTTCCTACTCTCACAGAATCTTCCAGTGCCAAGGTAACTTGTCTCTGTTTGCAGGGAAACTTATTCAACAAAGATCGTGGAATGAAGTTAGTTGGTCTATCACCATATTGGTTTGATGTTGCAGAAGGCCATGCTGTTTATAATACGGTTGATATGCAATCATTATTTCTTTTGACTGGACCAAATGGTGGTGGTAAATCTAGTTTACTTCGATCAATATGTGCTGCTGCATTACTTGGGATGTGTGGATTTATGGTACCTGCAGAGTCAGCTATCATTCCTCATTTTGATTCCATTGTCCTTCATATGAAATCTTATGATAGCCCCGCTGATGGGAAAAGTTCATTTCAGGTAGAAATGTCAGAGATCCGGTCCATTGTTGTTGGAGCTACTGAAAGAAGTCTTGTGCTCATAGATGAAATTTGTCGTGGAACAGAAACAGCTAAAGGAACTTGCATTGCCGGTAGCATTATCGAAAGTCTTGATAAAATAGGTTGCCTTGGTATAGTATCCACTCACTTGCACGGAATTTTTAGTTTGCCTCTAAATACCAGCAGGGTAATTTATAAAGCAATGGGAACAGTTTGTAACAATGGACTTACAAACCCAACTTGGAAGCTGATAGATGGAATCTGTAGAGAAAGCCTCGCATTTGAAACAGCAAAGAAGGAAGGTATTCCAGAGTCAATAATTCATCGGGCGGAAGACTTGTATTCGTCGTTTTATTCTAAAGAAGTGATAGTTGGAAGAGATGAGATTAACTTACTACATCTTTCTTCAAATGTTAATGATTCTGATGATCACCAAGTACGTAGCGAAAAAGCAGAAGCCGACAGTCACCCAACAAAATTACCTGTTGAAATCTTGCACAAGGAAGTTGAGCGAGCAATCATTTCTACATGCCATAAGAAGCTTACAGAGCTAACAACGGAGAAAAATACATTAATATTACCAGAAATACGTTGTGTTCTGATTTTCCCTAGGGAAAAACCGCCTCCATCAACAGTAGGTGCTTCAAGCGTTTATGTGATGCTCAGGCCTGATAACAAACTGTACGTTGGACAGTCAGATGATCTTGAAGGTCGTGTACGCGCACATCGCTCAAAAGAGGGAATGGAGAATGCCTCTTTTCTTTATTTTATTGTTCGAGGAAAGAGTTTGGCATGCCAATTTGAGACACTGCTCATAAACCAGCTTCCTAATCTAGGCTTTCAACTTACCAACACGGCAGATGGAAAACACAGAAATTTCGGCACATCAAATCTCTCTATTGAAAGCATGTCTATTTGTTAA 3207 40.35 SLKEGNLNWEMLQLKSRFPREVLLCRVGDFYEAIGLDACILVEYAGLNPFGGQRSDSIPRAGCPVVNLRQTLDDLTRNGWSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVNHELEFPEPMPVVGISRSAKGYCINFVLETMKTYSSEDGLTEEALVTKLRTCQYHYLFMHTSLRHNSSGTCRWGEFGEGGLLWGECNARHFEWFDGNPLTELLLKVKELYGLGDEVPFRNVTIPSANKPRSLTLGTATQIGAIPTEGIPCLLKVFLPSNCAGLPALYIRDLLLNPPAYETALTIQETCKLMSSVTCSIPEFTCVSPPKLVKLLELKEANHIEFCRMKNVLDEILHMYNNSELEKILKLLMNPTEMATGLKIDFNAFVDECECTSSRISEMIFLDGEHDQKISSFPLIPGDFFEDMESSWKGRVKRAHVEEAFDEVENAAETLSLAVREDFLPIVSRLKAITAPLGGPKGEILYSREHEAVWFKGKRFAPAVWAGTHGEEQIKQLKPALDSKGKKVGEEWFTTVKVEDALTRCRFILIHGHKSHFFSYICCSLCLDIQKKLSGILNYYFFIFSRYHEASAKAKVSVVCLLRQLSSVLQAKINILVFASTLLVIAKALFAHASEGMRRRWVFPTLTESSSAKVTCLCLQGNLFNKDRGMKLVGLSPYWFDVAEGHAVYNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGMCGFMVPAESAIIPHFDSIVLHMKSYDSPADGKSSFQVEMSEIRSIVVGATERSLVLIDEICRGTETAKGTCIAGSIIESLDKIGCLGIVSTHLHGIFSLPLNTSRVIYKAMGTVCNNGLTNPTWKLIDGICRESLAFETAKKEGIPESIIHRAEDLYSSFYSKEVIVGRDEINLLHLSSNVNDSDDHQVRSEKAEADSHPTKLPVEILHKEVERAIISTCHKKLTELTTEKNTLILPEIRCVLIFPREKPPPSTVGASSVYVMLRPDNKLYVGQSDDLEGRVRAHRSKEGMENASFLYFIVRGKSLACQFETLLINQLPNLGFQLTNTADGKHRNFGTSNLSIESMSIC 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9752738 9783958 + Bpe014644.1 Bpe14g01287 115596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01287 1068 Gene3D - 669 960 IPR027417 -
Bpe14g01287 1068 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 581 1020 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bpe14g01287 1068 Gene3D DNA repair protein MutS, domain I 5 106 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bpe14g01287 1068 Pfam MutS domain V 695 877 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe14g01287 1068 Pfam MutS domain I 12 102 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bpe14g01287 1068 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 57 541 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bpe14g01287 1068 PIRSF Msh6 678 933 IPR017261 GO:0006298|GO:0030983
Bpe14g01287 1068 PIRSF Msh6 9 107 IPR017261 GO:0006298|GO:0030983
Bpe14g01287 1068 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 57 541 - -
Bpe14g01287 1068 SMART mutATP5 691 877 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe14g01287 1068 CDD ABC_MutS_homologs 684 864 - -
Bpe14g01287 1068 SUPERFAMILY GIY-YIG endonuclease 977 1040 IPR035901 -
Bpe14g01287 1068 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 581 1020 - -
Bpe14g01287 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 878 IPR027417 -
Bpe14g01287 1068 ProSitePatterns DNA mismatch repair proteins mutS family signature. 772 788 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe14g01287 1068 SUPERFAMILY DNA repair protein MutS, domain I 5 110 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01287 - - - pper:18791101 1555.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01424 Bpe-Chr8:15006340 Bpe14g01287 Bpe-Chr14:9752738 5.87E-16 dispersed
Bpe11g01156 Bpe-Chr11:8578887 Bpe14g01287 Bpe-Chr14:9752738 3.73E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01287 Bpe_Chr14 FPKM 39.962067 43.530338 28.511631 31.471098 40.630104 40.155823 40.062607 37.779713 36.700222 36.821808