Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01297 ATGGGGACAGGATATTCACCTGAAAAGGAGAATAGGCCTTGCCCATCTTCTTCACCGTTTTGTGTGGTAGACTCCTCTCAGCCCTATCATCCTTACGGCCAAGGAGGATTTTCTGAGGCTTCCTTCTCCGGAAAGATAAAATTCCTCTGCAGCTTTGGGGGACGAATATTACCCAGACCCAGCGATGGAAAACTCAGATACGTTGGCGGAGAAACACGCATAATGTCTATAAGAAAGAACATCACCTGGGAAGAAGTTAGAAAGAAAACTTGTGGAATATGCAAACAATCTCATACTATAAAATATCAGCTTCCCGGAGAAGATCTCGATGCACTCATCTCCGTTTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCAAGAGCTAGAAAGAATCGAGGGTTCTCAAAGATTGCGAATATTTCTCGTGTCTTCAAATGAATCTGAAAGCCCGAGCTCTGTTGAAGCAAGAGTTGTAGAGCCGAGTGATGCAGACTATCAGTACGTTGCAGCTGTAAATGGGATGGTGGATAGAAGTCCTCAGAAGAGCTCCAATGGACAAAGTTTGACAAGCCAGACTAGCCAGCTGGGGCTCATCTCAGATTCTAGCCCAAACTTCTGCAGGGACTCTCCTTCGTCTGCACATATTAAAGAGTTCAAGGATATGAGTCCAGTTTCTGCAGAATTTTCTGGAACAATATCAAGACGTCCTAATCATATTCTAACTCCAATTCGGATTCCTGAGAAGTCATTCAATCAATCCCCTTATATATCTCCCAATCCTGTTCATCGAAATGATTTTAAGAATTCTGACATGAAATTAGGCGGGAATTCTCCATACATGCTTGAAAACCCGTATTACGTTGACCCATCAACTTATTACAATAATCTTCGTCATTGGTCTCCAATATTAAATCATGAGCAAAATTCATGTTCTGAACAGATTGACCAATCATTCATGCCCCATAATACTCATGATATTCACTTCCTCAGCCAAACTCCAAGCAAAGATTCAGTCCCGTCTCCAAGTTGCAGGGTTGAGAATATTGTTTGTAATTATGACAAGGTCTTCCCCGACGCAGATGTGAATTGTCCGCGTTACAAAATGATGCATCTGTTTTCGGACTCACAGCTGAAAGAAAGGTCCAGCTATGGAGTAGAAGAAGCTGCAGTGCCACTGACACCGTTGAATCTCGAAAAAGAAGAATCAACTTCACTGCTATTGCCAAGTGCCTTGCAGGAATGGCCAGCTCAATGGAAAGAAATCGTTCAAGGAAAACAGCCGAACATCAAATGTGGAAATCATCCAACTTTGATGGCTGACTTTTCCAAGGGAAAGTCTGAAGAATTCCAGGAGATTTTAAACTGGAAGGGGAAAAATGATAACTATTCTGACCAAATCAGAAGAAACTTTAACTTCGAGTCTGATGATAACACTGTGGAACTTAACAACTTGAGAGCAGCTGATTTAGTTAACTTAACAGATAAAACAGAGTTAAATGCTTCAGAGTTTATTCATAAGAGCCTAAATTCTATCATGGATCAGCAATGTACTGGAAATGAAGCGTCAAGTAGCCAACCACTTTCACATGAATCTCCTTATTTAATGAAGGTTGCATCTCAAGCTTTGTCCAATCAACGAACCACAGATGATGCCTCTCAGAGTTTCACTGGTTCTTCTCCAAAAATTGAGATTTCTCCGCAGGGCTTTAATCCTGTGAGTTATAGTATGCATACGGTTGAAAACATAGTCCTTAGCGGCAAGTCATCAAATGGTGTAGAATCTGTCTGTGCTCAATCGGAACACTCAAATAGCTATCATGCCAATGATGTTATTGGTTCGACTGTTCTGGTTGAAGACGTCACAGATATTATGCCTCCTAGTCCTGACATACCTTTGTCATCAAAAGTGGTCCCATGGATTGAGGATGAGGCCAGCGACGGATTTCAATCTTCTAAAGGATCAGAAGGTCGAAGTTCTTGTCCAGATTCTGAATACGAGGATTTAGAAGGTGATGGAAGAGACCCAAGTGTTTCCATAGGTGATGCTGCAATTGCTGAGATTGAAGCTGGAATCTATGGTCTACAGATAATAAAGAACGCCGATCTAGAAGATCTGCAGGAGTTGGGCTCCGGAACATTCGGAACAGTTTATCATGGAAAGTGGAGAGGGACAGATGTTGCAATCAAGAGAATAAAAAAGAGTTGCTTTTCAGGCAGATCGTCTGAGCAAGATCGATTGATGAAAGACTTCTGGAGAGAGGCTCGAATCTTGTCGACTCTTCACCACCCAAATGTATTAGCATTCTATGGTGTGGTTCCTGATGGGCCAGAGGGAACATTGGCGACTGTAACCGAGTACATGGTAAATGGATCGTTGAGACATGTTCTATTGAAGAAGGAGAGGGTGCTAGATCGAAGGAAACGGCTCATCATTGCGATGGATGCAGCATTTGGAATGGAATATTTACATTTGAAAAATATAGTGCATTTTGATCTGAAATGTGACAATTTGCTTGTCAATTTGAGAGATCCCGAGCGACCCATATGCAAGGTCGGAGATTTTGGGTTGTCAAGAATTAAGCGTAACACCCTTGTGACTGGTGGTGTGAGAGGAACTCTCCCATGGATGGCTCCGGAGTTATTAGATGGTAGTAGTAGCCAGGTGTCGGAGAAGGTTGATGTTTTCTCATTCGGAGTTGCGATGTGGGAGATTTTGACAGGAGAAGAGCCATATGCTAATATGCATTGTGGAGCTATAATAGGCGGAATTGTAAACAACACATTGAGGCCTCCTATTCCGAAACGATGTGATCCTGAATGGAAAAGCTTGATGGAGGAATGTTGGTCTCCTGACCCCAAGTCTCGGCCGTCATTTACTGAGATAACAAATCGACTACGAGAAATGTCAGTTTCTCTCCAGAAGAAGCGTCCTAATCTGAATCTGAAGAGACCGGAGTCTAACTATAAGTAG 2979 42.36 MGTGYSPEKENRPCPSSSPFCVVDSSQPYHPYGQGGFSEASFSGKIKFLCSFGGRILPRPSDGKLRYVGGETRIMSIRKNITWEEVRKKTCGICKQSHTIKYQLPGEDLDALISVCSDEDLHHMIEEYQELERIEGSQRLRIFLVSSNESESPSSVEARVVEPSDADYQYVAAVNGMVDRSPQKSSNGQSLTSQTSQLGLISDSSPNFCRDSPSSAHIKEFKDMSPVSAEFSGTISRRPNHILTPIRIPEKSFNQSPYISPNPVHRNDFKNSDMKLGGNSPYMLENPYYVDPSTYYNNLRHWSPILNHEQNSCSEQIDQSFMPHNTHDIHFLSQTPSKDSVPSPSCRVENIVCNYDKVFPDADVNCPRYKMMHLFSDSQLKERSSYGVEEAAVPLTPLNLEKEESTSLLLPSALQEWPAQWKEIVQGKQPNIKCGNHPTLMADFSKGKSEEFQEILNWKGKNDNYSDQIRRNFNFESDDNTVELNNLRAADLVNLTDKTELNASEFIHKSLNSIMDQQCTGNEASSSQPLSHESPYLMKVASQALSNQRTTDDASQSFTGSSPKIEISPQGFNPVSYSMHTVENIVLSGKSSNGVESVCAQSEHSNSYHANDVIGSTVLVEDVTDIMPPSPDIPLSSKVVPWIEDEASDGFQSSKGSEGRSSCPDSEYEDLEGDGRDPSVSIGDAAIAEIEAGIYGLQIIKNADLEDLQELGSGTFGTVYHGKWRGTDVAIKRIKKSCFSGRSSEQDRLMKDFWREARILSTLHHPNVLAFYGVVPDGPEGTLATVTEYMVNGSLRHVLLKKERVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVTGGVRGTLPWMAPELLDGSSSQVSEKVDVFSFGVAMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDPEWKSLMEECWSPDPKSRPSFTEITNRLREMSVSLQKKRPNLNLKRPESNYK 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9906783 9910628 + Bpe014653.1 Bpe14g01297 115606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01297 992 Pfam PB1 domain 62 146 IPR000270 GO:0005515
Bpe14g01297 992 SUPERFAMILY Protein kinase-like (PK-like) 698 967 IPR011009 -
Bpe14g01297 992 CDD STKc_MAP3K-like 711 968 - -
Bpe14g01297 992 MobiDBLite consensus disorder prediction 662 677 - -
Bpe14g01297 992 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 33 205 - -
Bpe14g01297 992 ProSitePatterns Protein kinases ATP-binding region signature. 711 736 IPR017441 GO:0005524
Bpe14g01297 992 Gene3D Phosphorylase Kinase; domain 1 698 792 - -
Bpe14g01297 992 Pfam Protein tyrosine and serine/threonine kinase 708 968 IPR001245 GO:0004672|GO:0006468
Bpe14g01297 992 MobiDBLite consensus disorder prediction 543 566 - -
Bpe14g01297 992 Gene3D Transferase(Phosphotransferase) domain 1 793 991 - -
Bpe14g01297 992 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 471 982 - -
Bpe14g01297 992 PRINTS Tyrosine kinase catalytic domain signature 824 842 IPR001245 GO:0004672|GO:0006468
Bpe14g01297 992 PRINTS Tyrosine kinase catalytic domain signature 939 961 IPR001245 GO:0004672|GO:0006468
Bpe14g01297 992 PRINTS Tyrosine kinase catalytic domain signature 895 917 IPR001245 GO:0004672|GO:0006468
Bpe14g01297 992 PRINTS Tyrosine kinase catalytic domain signature 787 800 IPR001245 GO:0004672|GO:0006468
Bpe14g01297 992 SMART PB1_new 60 147 IPR000270 GO:0005515
Bpe14g01297 992 PANTHER SERINE-THREONINE PROTEIN KINASE 471 982 - -
Bpe14g01297 992 ProSiteProfiles Protein kinase domain profile. 705 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g01297 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Bpe14g01297 992 Gene3D - 64 148 - -
Bpe14g01297 992 CDD PB1_UP2 49 144 - -
Bpe14g01297 992 PANTHER SERINE-THREONINE PROTEIN KINASE 33 205 - -
Bpe14g01297 992 SUPERFAMILY CAD & PB1 domains 61 152 - -
Bpe14g01297 992 SMART serkin_6 705 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g01297 992 MobiDBLite consensus disorder prediction 648 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01297 - - - qlo:115993791 1015.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00631 Bpe-Chr1:4200836 Bpe14g01297 Bpe-Chr14:9906783 2.45E-32 dispersed
Bpe02g02094 Bpe-Chr2:22413923 Bpe14g01297 Bpe-Chr14:9906783 7.46E-27 dispersed
Bpe07g00501 Bpe-Chr7:9863511 Bpe14g01297 Bpe-Chr14:9906783 8.06E-41 dispersed
Bpe14g01297 Bpe-Chr14:9906783 Bpe04g01116 Bpe-Chr4:9134316 9.10E-54 dispersed
Bpe14g01297 Bpe-Chr14:9906783 Bpe13g01207 Bpe-Chr13:17402564 4.10E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63744 PF07714 PK_Tyr_Ser-Thr 1.10E-62 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01297 Bpe_Chr14 FPKM 10.495781 14.265706 9.225605 8.45565 3.427986 8.392101 4.991787 6.931664 3.93556 5.486862