Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01298 ATGGGAGATATGAACACCGATTTGATAGTGGAGGTTCCGGACACACCTGATAGATTAGTCGCTCGGCAAAATAACAAGGGAAAATGTGTTTGGAAAGAAACACACTCATCATTACAAAGTCATTTGAGTAACACTGATCCACTGGATGGAAAAAGAATAAATGGATTCAGGGGAATTGGTCTATTGGTTAATGAAAATGATCACAAGGGAAGCCTTGTTATGAGTAGGAAAAATCATATCTTTAATGATGTTCAGGATCATGGCAAGTCAATTAATCTTTCTTCACCAGAGAATTCTCACACTTCGCCCAATCATCATTATAGAAGAGCAGCCATCGATAAGCCATCTAATTTGGAGAAAGGAAAATCTATTGGAGTTCAGAATATGGATAATGTAAGAAGTAAAATCATGCCATCTGTGGGCAAGGAGAACAATAGTTATTCAGACGTAAAAAAACAGAATAATTACAGCTGTAAATCTGAGATTGTTTCTAAGAATGGTGTGTCAAGGGCTTTTCGGGTGGAAAATGTTGCAAAAGATTCAGTGTCATATGGTGAAAGTTCATCGATACTTCAAATTCCGGATTCTCCAAAGCAATCTAGCCATGTCTTCCATGGGAAGGAAAAGGTTGATGGCAATACTTCTCAAGATCTTGGTTTGTCAGTGCCTCCTAGAAAAGTGTTTAAGAATTCCACTGATGGTCGCTATAAGTTTGAGAAACAAGTGCCTGAACCTCATTGTAATGTAACATCAACGAGAACAAGTGGCAGAAAGAGGTTGGTACGAAATGGTTGTATCTCTCCTCACAATATTGCTATGAAAGCTAAACAATTAGTCAAACAGGAAAGTAGCAATTCTAAAATTGTTTTTCATAGTCTGCCTGGGAATACGCTACCACCACCTTCATCTTGTCGTTTTGACATGAGTGATATAGTTTCTGAAGGGATTCACACGAACAAAGATAAAGGAAAAGGAGTAATAGTTCATCCTTCTACATTTCAAGCTTATGATACTCGAAATACTGCATTTGACCTTAACATTGAAAGGATTCATGGATCTACGAGCTTTACTGCTGGGGATACTGGAAAAGAAGATGCCAAGCTAGAGGCAGCTCAACGATCTGAAGAGTTTGGTGGATGGAGAAGTACACGCAGTCGCTCAACGAGAATAGATCATCAGTTCTCTGATGCATCAGGTGTCTCTTCACAGATGAAATCTAATAATATTACAAGATGTGATAGTGAATATGGATTGGAGGGACATGATATTGTCAGCAACGAAAGCCAAATTATTCAGAATCATTATGGTGGAAATACTGATGCAAATCATAGAGACTTCAGGTTTATGTCCAATGTACACCAGATAGCTGAACCAAATCGGACAGAATGTGAGTTGAGCAAAAGGCAGAAGAAACAAGGATCTGCTTCAATAAATAATAGCAAATGCAGTGTTTCAGATATCATATGTCTTGATTCACCTGGGGAGTCATCAAATTCAAGGTCATCCAGAATCCAAGGTCGTCAATCTCGCCCACGCAATACATTGAGGGATCCAATTGTTGGGTTTGGTAAATTATCTCCTGGAATGGCACAACCAGTTTCTCGAGATTCCCGTTACCCAAATAATGATGAATCTCATGACGCTAGGATGAGGCAACTTGAAGCTGACGAGAAGCTGGCTCGTGAACTTCAAGAACAACTATATCATGATTTCCCTTTTATAGAATTTAGTGAGTTTGATGAGAATATAGCATTGGCACTTCAACAAGAAGAGGAAAGTTTTCTTGCTTCTTCTGGTGGAAGTCGTAGTGCATCACAGACAAGGAGACTACCGATGGCACATTCACGAAGACAACCTCGATCACGAGCTTTTCAAATTGCTACCGATAGGACAGGAATACAGCGCAGGGCTTCAAACTACAATAGAGTTGATTTGAGGAGTCGGTTTTCTGGCTCATCATATAGGGTGTCATCCAGAGACAGGGGTCTTCGCTTTCCTTCGGATATGGACTTAGACATGAGAATTGATATATTAGAAGCATTGGAGGCTGCAGTCGGTGATGATACGAATGCTACTAGAGTTTCCAATCATATTTTTCAACTTCATCACGACTTTAGCGATGCTGATTATGAAATGTTGCTTACCCTTGATGATAACAATCACTGTCATGCTGGCGCAACAGTCAACCAGATTAATTTTTTGCCACAGTCCACAGTACAGACCGAAAACTTTGAAGAAGCCTGTGCAATTTGTCTTGAGACCCCAACGACTGGAGATACCATCCGCCATCTTCCATGTTTTCACAAATTTCACAAAGATTTAAAAGGGAACTCCTGTAAATGTCTAAATCACATCCCTTTTCAGTGTATCGATCCATGGCTACGCAGAAAAACAACATGCCCAGTTTGCAAGTTTTCCATGGCTTAA 2427 39.84 MGDMNTDLIVEVPDTPDRLVARQNNKGKCVWKETHSSLQSHLSNTDPLDGKRINGFRGIGLLVNENDHKGSLVMSRKNHIFNDVQDHGKSINLSSPENSHTSPNHHYRRAAIDKPSNLEKGKSIGVQNMDNVRSKIMPSVGKENNSYSDVKKQNNYSCKSEIVSKNGVSRAFRVENVAKDSVSYGESSSILQIPDSPKQSSHVFHGKEKVDGNTSQDLGLSVPPRKVFKNSTDGRYKFEKQVPEPHCNVTSTRTSGRKRLVRNGCISPHNIAMKAKQLVKQESSNSKIVFHSLPGNTLPPPSSCRFDMSDIVSEGIHTNKDKGKGVIVHPSTFQAYDTRNTAFDLNIERIHGSTSFTAGDTGKEDAKLEAAQRSEEFGGWRSTRSRSTRIDHQFSDASGVSSQMKSNNITRCDSEYGLEGHDIVSNESQIIQNHYGGNTDANHRDFRFMSNVHQIAEPNRTECELSKRQKKQGSASINNSKCSVSDIICLDSPGESSNSRSSRIQGRQSRPRNTLRDPIVGFGKLSPGMAQPVSRDSRYPNNDESHDARMRQLEADEKLARELQEQLYHDFPFIEFSEFDENIALALQQEEESFLASSGGSRSASQTRRLPMAHSRRQPRSRAFQIATDRTGIQRRASNYNRVDLRSRFSGSSYRVSSRDRGLRFPSDMDLDMRIDILEALEAAVGDDTNATRVSNHIFQLHHDFSDADYEMLLTLDDNNHCHAGATVNQINFLPQSTVQTENFEEACAICLETPTTGDTIRHLPCFHKFHKDLKGNSCKCLNHIPFQCIDPWLRRKTTCPVCKFSMA 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9922351 9927859 - Bpe014654.1 Bpe14g01298 115607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01298 808 MobiDBLite consensus disorder prediction 493 512 - -
Bpe14g01298 808 CDD RING-H2_PA-TM-RING 748 804 - -
Bpe14g01298 808 PANTHER - 547 806 - -
Bpe14g01298 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 808 IPR013083 -
Bpe14g01298 808 MobiDBLite consensus disorder prediction 596 612 - -
Bpe14g01298 808 SUPERFAMILY RING/U-box 741 806 - -
Bpe14g01298 808 ProSiteProfiles Zinc finger RING-type profile. 748 804 IPR001841 -
Bpe14g01298 808 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 547 806 - -
Bpe14g01298 808 MobiDBLite consensus disorder prediction 596 622 - -
Bpe14g01298 808 MobiDBLite consensus disorder prediction 493 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01298 - - - qsu:112025738 504.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01298 Bpe-Chr14:9922351 Bpe15g01279 Bpe-Chr15:21173037 2.92E-13 dispersed
Bpe14g01298 Bpe-Chr14:9922351 Bpe04g01831 Bpe-Chr4:23613033 1.01E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01298 Bpe_Chr14 FPKM 16.353037 22.206715 0.756957 0.712926 0.644499 0.861832 0.288227 2.342371 3.6559 3.083618