Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01313 ATGGCTGTGGCTATGGCTACGCTTTTAGCAACGAAGCCTCTCATTTTCTGGAATGTTCCGTTTGATGAAAGACATCGTTCTTCTCATTTGTGCTTTCTGTCTCCAAACTCTAACCTGGGAAACCAAGCTCTATGTTTCTCATATCAATTAGGGTCTTCGCAAGCTCTTTTGCGTTCCTCTTCTTCTGTGAACGAGGCAGTTACTGATCAGAAGGTCTCCACTCTTCGCGAAATTTGTGAAGGTTACGTTCCCGAATATGTGATGCGAAGGGCGGAGGAAGTTGGTTATTTGGTGCCCACTGAGGTACAGAAACAAGCTCTGCCCGTATTGTTTTCGGGTCGCGATTGCATTCTTCATGCGCAGACAGGTTCAGGTAAGACGCTTACATATCTGCTACTGATATATTCGGTTATAAACATTCAAAGATCTGCTGTGCAAGCGCTTATAGTGGTGCCCACCCGAGAACTTGGCATGCAAGTTACGAAAGTTGCTCGGAAACTGGCTGCAAATCCTGTTGACTGTGAGTCGGAGCAGAAGTCTTATGTGGTCATGGCTCTTTTAGATGGAGGATTGTTGAAAAGACACAGGACTTGGCTAAAGGCAGAGCCTCCTGCAATAGTTGTTGCAACACTTGGGAGTTTGTGTCAGATGCTAGACAAGGAAATCCTTAATCTTGATTCATTGCGTGTGATGGTAATTGATGAGGTTGATTTTATGTTCAACTCTTCAAAACAAGTCAGTTCCCTTCGCAAGCTCTTGACATCATTTTCTTCATTTGAAAACCGTCAGACTGTTTTTGCCAGTGCATCAGTTCCCCAGCATAGACGCTTTTTACGTGACTGTGTACAGCATAAATGGACAAATAGTAATGTGATTCATGTTCATTGTAATCCGATAAATCCAATGCCATCATGTCTACATCATAGATTGGTGATATGCAACAAGAGTGAAAAGTATCAGTCCTTCCTATCTTTACTACAGTGTGATGCACCTAACTCTGGCATTATATTTGTCGGTGAGCAGTCTGAGAGGTCAAAAAAAGCTGGGAACTATCCAACGACGACTCTGTTGGTAAATTTTCTGAAATCGTCATACAAGGGATCCTCTGAGATTCTCGTACTTGAAGAAGAAATAAACTATAATGAGCGAGCTGCATCTTTGTCAGAGTTGAGACAAGGAGGAGGGTATCTTCTAGTAACAACTGACATATTGGCCAGAGGGGTTGACCTGCCTGAAACAACTCATATATACAACTTTGATCTCCCAAGAACTGCTACTGATTACCTTCATCGTGCCGGAAGGACTGGTAGGAAACCTTTTTCTGACCAGAAATGTATGGTTACCAACATTATTACATCAGCAGAACTGTTTGTCTTGCAAAGATATGAAAACGAACTGATGTTCACCAGTGAAGAACTAATTATATAA 1428 42.3 MAVAMATLLATKPLIFWNVPFDERHRSSHLCFLSPNSNLGNQALCFSYQLGSSQALLRSSSSVNEAVTDQKVSTLREICEGYVPEYVMRRAEEVGYLVPTEVQKQALPVLFSGRDCILHAQTGSGKTLTYLLLIYSVINIQRSAVQALIVVPTRELGMQVTKVARKLAANPVDCESEQKSYVVMALLDGGLLKRHRTWLKAEPPAIVVATLGSLCQMLDKEILNLDSLRVMVIDEVDFMFNSSKQVSSLRKLLTSFSSFENRQTVFASASVPQHRRFLRDCVQHKWTNSNVIHVHCNPINPMPSCLHHRLVICNKSEKYQSFLSLLQCDAPNSGIIFVGEQSERSKKAGNYPTTTLLVNFLKSSYKGSSEILVLEEEINYNERAASLSELRQGGGYLLVTTDILARGVDLPETTHIYNFDLPRTATDYLHRAGRTGRKPFSDQKCMVTNIITSAELFVLQRYENELMFTSEELII 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10132274 10135878 - Bpe025554 Bpe14g01313 115622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01313 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Bpe14g01313 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 447 IPR027417 -
Bpe14g01313 475 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 474 - -
Bpe14g01313 475 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
Bpe14g01313 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Bpe14g01313 475 SMART helicmild6 355 439 IPR001650 -
Bpe14g01313 475 SMART ultradead3 95 309 IPR014001 -
Bpe14g01313 475 Gene3D - 51 286 IPR027417 -
Bpe14g01313 475 CDD SF2_C_DEAD 306 437 - -
Bpe14g01313 475 CDD DEADc 87 285 - -
Bpe14g01313 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Bpe14g01313 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 52 474 - -
Bpe14g01313 475 Gene3D - 304 473 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01313 - - - mnt:21390744 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g01313 Bpe-Chr14:10132274 Bpe03g00649 Bpe-Chr3:26707398 2.58E-35 dispersed
Bpe14g01313 Bpe-Chr14:10132274 Bpe07g00856 Bpe-Chr7:14710133 1.09E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g450 . . . . . Bpe14g01313 . . . . Cma06g01426 . Car06g01230 . . . . . . . . . . . . . . . . . . . . Cone7ag0225 . . . . . . . . . . . Bma02g00688 . . Cmo06g01430 . . . . . . . . . . . . . . . . . . . . . . Csa03g01356 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005533 1 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01313 Bpe_Chr14 FPKM 9.178697 10.29839 10.12589 10.34633 10.920746 9.285525 10.49434 17.308941 16.819263 17.377911