Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g01316 ATGGCGGATTCTGCCGCCCAACCTAGCCGATCCAGGGACCTTGACAAGCTTCTTCTTAGGTCCGGGAATCTCATCGGCCCCAACTTCGAACCTGGATCTCAGTTGAGAGACGACCTTCAGCAATTCGTGAAAGTTTTGGTGGTAGGGGCTGGTGGTTTGGGATGCGAGCTTTTGAAGGACTTGGCTTTATTTGGTTTTCGAAATCTTCAAGTTATTGATATGGACCGCATCGAAGTATCCAATCTCAACCGCCAGTTTCTTTTCAGACTTGAGGACGTTGGTAAGCCAAAGGCTGAGGTGGCTGCAAAACGGGTCATGGAAAGAGTTAGTGGAGTGGAAATTGTGCCACATTTTGGTCGAATAGAGGACAAAGACATTGAATTTTATAATGATTTCCACATTATTGCACTCGGTCTTGATTCCATTGAAGCTCGGAGCTACATAAATGCTGTAGCTTGTAGCTTCCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAAACAATTAAACCTATGGTCGATGGGGGAACTGAAGGTTTTAAGGGCCATGCTAGGCTGATTGTACCGGGGGTGACACCATGCTTTGAGTGTACCATTTGGCTCTTTCCCCCTCAAGTCAAGTTTCCTTTATGCACCCTCGCAGAAACCCCAAGAACTGCAGCACATTGTATAGAATATGCTCACTTGATTAAATGGGATGAGATTTTTCATGGAAAAGCTTTTGATCCTGATGACCCTGAACATATGAAGTGGGTTTATACGGAGGCTTTGAAGAGAGCTGAGCTTTTCGGCATTCCAGGAGTTACATATTCCTTAACACAGGGTGTTGTGAAGAATATCATCCCAGCCATTGCTTCCACAAATGCCATTATATCAGCTGCATGTACATTGGAAACTCTGAAGATTGCATCAGGATGCAGCAAAACTCTTTCAAACTATTTAACGTATAATGGAGACGAAGGTCTACACACTAAAGTGACTGAATTTGTCAAAGACAAGGATTGCCTCGTGTGTGGTCCTGGTGTTTTAATTGAGCTGGACTCTTCAGTTACTTTGCAAAAGTTTATTGAGATGCTGGAAGAGCACCCCCAGCTGCAATTATCAAAAGCAAGTGTGACACACCGAGGGAAGAATCTATACATGCAAGCACCTCCAGTATTGGAAGAGATGACCCGGTCCAACTTGAGTATACAACTCTTTGAGTTAATGGGTAAGGTTTTGAAGGACGTTATCCATGTCACTGGCATACAAAACAAGGAGAAGAGAAGCTCCTGCTTGAGGAAATTACGTGTGGTTTTCAAGGGAGTCGACGGTGTCACCGATATGGACACGGCAGGAGGGGCATAA 1347 44.47 MADSAAQPSRSRDLDKLLLRSGNLIGPNFEPGSQLRDDLQQFVKVLVVGAGGLGCELLKDLALFGFRNLQVIDMDRIEVSNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVEIVPHFGRIEDKDIEFYNDFHIIALGLDSIEARSYINAVACSFLEYDSDDNPREETIKPMVDGGTEGFKGHARLIVPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEIFHGKAFDPDDPEHMKWVYTEALKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACTLETLKIASGCSKTLSNYLTYNGDEGLHTKVTEFVKDKDCLVCGPGVLIELDSSVTLQKFIEMLEEHPQLQLSKASVTHRGKNLYMQAPPVLEEMTRSNLSIQLFELMGKVLKDVIHVTGIQNKEKRSSCLRKLRVVFKGVDGVTDMDTAGGA 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10153527 10157260 - Bpe014670.1 Bpe14g01316 115625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g01316 448 SMART E2_bind_2 344 434 IPR014929 GO:0019781|GO:0045116
Bpe14g01316 448 ProSitePatterns Ubiquitin-activating enzyme active site. 209 217 IPR033127 -
Bpe14g01316 448 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 44 416 IPR035985 GO:0008641
Bpe14g01316 448 Pfam ThiF family 34 335 IPR000594 -
Bpe14g01316 448 PANTHER NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT 8 413 IPR030468 GO:0019781|GO:0045116
Bpe14g01316 448 Gene3D - 42 342 - -
Bpe14g01316 448 Gene3D - 343 427 - -
Bpe14g01316 448 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 211 279 IPR023318 -
Bpe14g01316 448 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 8 413 IPR045886 -
Bpe14g01316 448 Pfam E2 binding domain 345 414 IPR014929 GO:0019781|GO:0045116
Bpe14g01316 448 CDD Uba3_RUB 44 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g01316 K10686 UBA3, UBE1C; NEDD8-activating enzyme E1 [EC:6.2.1.64] - csv:101209336 788.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00074 Bpe-Chr1:474969 Bpe14g01316 Bpe-Chr14:10153527 1.83E-21 dispersed
Bpe01g00873 Bpe-Chr1:18803277 Bpe14g01316 Bpe-Chr14:10153527 4.30E-06 dispersed
Bpe07g00415 Bpe-Chr7:4184478 Bpe14g01316 Bpe-Chr14:10153527 1.53E-35 dispersed
Bpe09g00160 Bpe-Chr9:1074358 Bpe14g01316 Bpe-Chr14:10153527 5.16E-12 dispersed
Bpe14g01316 Bpe-Chr14:10153527 Bpe08g00062 Bpe-Chr8:331882 4.94E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g01316 Bpe_Chr14 FPKM 10.475962 11.986511 52.824776 54.341648 6.621052 6.047493 7.623106 38.326332 35.820435 42.815773