Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00056 ATGGTGAGGAAGAGCAAAGGACGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGTAATCTCCAAGTGACGTTTTCGAAGCGTCGGTCTGGGCTTTTCAAGAAGGCGAGTGAGCTTTGTACGCTTTGTGGGGCGGAGATTGCAATCGTAGTGTTTTCTCCCGGGAAGAAGGTTTTCTCGTTCGGCCACCCATGTGTTGAGTCGCTCATCGAGCGGTTCTTGACCCGAAACCCTCAACCGACTTCCGGGACTTTGCAGCTCATTGAGGCCCATCGAAACGCCACTGTGCGGGAGCTGAATGCCCAACTAACCCAAGTCACAAGCCAACTTGAGATCGAAAGGAAACGAGGAGAGGACCTGAACAAAATGCGTCGAGACGGCCAAACGGCAGAGTGTTGGTGGGAGTGTCCGGTCGATGAGCTCGACAAGCCACAACTCGATCAACTCAAGGCTTCATTGGAAGAGCTGAAGAAGAATGTGGCTAAGCAGGCTGATAGAATTCTCATCCAAACCTCAAATCCTCCTCCTCCTCCCCCACCTATTCTTCTTCCTCCTCTTCCTTCTTCTCACTATTTCCATGGAAGTTCAAGCCACCAATCTTCAATGTTTCCTTTCGATTCAAAGAATCATGTTGGATATAATCCTGGCTTTGGTCGTGGTTTCTACTGA 672 50.0 MVRKSKGRQKVEMVKMQNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGKKVFSFGHPCVESLIERFLTRNPQPTSGTLQLIEAHRNATVRELNAQLTQVTSQLEIERKRGEDLNKMRRDGQTAECWWECPVDELDKPQLDQLKASLEELKKNVAKQADRILIQTSNPPPPPPPILLPPLPSSHYFHGSSSHQSSMFPFDSKNHVGYNPGFGRGFY 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7190164 7190835 - Bpe000991.1 Bpe15g00056 115735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00056 223 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Gene3D - 85 175 - -
Bpe15g00056 223 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Bpe15g00056 223 CDD MADS_MEF2_like 7 76 IPR033896 GO:0000977|GO:0045944
Bpe15g00056 223 PANTHER MADS BOX PROTEIN 5 177 - -
Bpe15g00056 223 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bpe15g00056 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Coils Coil 147 167 - -
Bpe15g00056 223 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Coils Coil 97 117 - -
Bpe15g00056 223 SUPERFAMILY SRF-like 7 80 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00056 - - - cit:102622898 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00466 Bpe-Chr5:18989393 Bpe15g00056 Bpe-Chr15:7190164 6.92E-60 dispersed
Bpe08g00756 Bpe-Chr8:9256394 Bpe15g00056 Bpe-Chr15:7190164 8.68E-36 dispersed
Bpe10g00716 Bpe-Chr10:13560694 Bpe15g00056 Bpe-Chr15:7190164 6.69E-23 dispersed
Bpe12g00730 Bpe-Chr12:12803394 Bpe15g00056 Bpe-Chr15:7190164 3.57E-108 dispersed
Bpe15g00056 Bpe-Chr15:7190164 Bpe07g00511 Bpe-Chr7:10389657 9.52E-18 dispersed
Bpe15g00056 Bpe-Chr15:7190164 Bpe15g00277 Bpe-Chr15:14236773 1.62E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22533 PF00319 SRF-TF 1.50E-24 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00056 Bpe_Chr15 FPKM 2.563301 2.849637 0.389996 0.388537 1.833756 1.808714 1.751205 0.493007 0.389054 0.721185