Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00056 ATGGTGAGGAAGAGCAAAGGACGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGTAATCTCCAAGTGACGTTTTCGAAGCGTCGGTCTGGGCTTTTCAAGAAGGCGAGTGAGCTTTGTACGCTTTGTGGGGCGGAGATTGCAATCGTAGTGTTTTCTCCCGGGAAGAAGGTTTTCTCGTTCGGCCACCCATGTGTTGAGTCGCTCATCGAGCGGTTCTTGACCCGAAACCCTCAACCGACTTCCGGGACTTTGCAGCTCATTGAGGCCCATCGAAACGCCACTGTGCGGGAGCTGAATGCCCAACTAACCCAAGTCACAAGCCAACTTGAGATCGAAAGGAAACGAGGAGAGGACCTGAACAAAATGCGTCGAGACGGCCAAACGGCAGAGTGTTGGTGGGAGTGTCCGGTCGATGAGCTCGACAAGCCACAACTCGATCAACTCAAGGCTTCATTGGAAGAGCTGAAGAAGAATGTGGCTAAGCAGGCTGATAGAATTCTCATCCAAACCTCAAATCCTCCTCCTCCTCCCCCACCTATTCTTCTTCCTCCTCTTCCTTCTTCTCACTATTTCCATGGAAGTTCAAGCCACCAATCTTCAATGTTTCCTTTCGATTCAAAGAATCATGTTGGATATAATCCTGGCTTTGGTCGTGGTTTCTACTGA 672 50.0 MVRKSKGRQKVEMVKMQNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGKKVFSFGHPCVESLIERFLTRNPQPTSGTLQLIEAHRNATVRELNAQLTQVTSQLEIERKRGEDLNKMRRDGQTAECWWECPVDELDKPQLDQLKASLEELKKNVAKQADRILIQTSNPPPPPPPILLPPLPSSHYFHGSSSHQSSMFPFDSKNHVGYNPGFGRGFY 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7190164 7190835 - Bpe000991.1 Bpe15g00056 115735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00056 223 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Gene3D - 85 175 - -
Bpe15g00056 223 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Bpe15g00056 223 CDD MADS_MEF2_like 7 76 IPR033896 GO:0000977|GO:0045944
Bpe15g00056 223 PANTHER MADS BOX PROTEIN 5 177 - -
Bpe15g00056 223 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bpe15g00056 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Coils Coil 147 167 - -
Bpe15g00056 223 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bpe15g00056 223 Coils Coil 97 117 - -
Bpe15g00056 223 SUPERFAMILY SRF-like 7 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00466 Bpe-Chr5:18989393 Bpe15g00056 Bpe-Chr15:7190164 6.92E-60 dispersed
Bpe08g00756 Bpe-Chr8:9256394 Bpe15g00056 Bpe-Chr15:7190164 8.68E-36 dispersed
Bpe10g00716 Bpe-Chr10:13560694 Bpe15g00056 Bpe-Chr15:7190164 6.69E-23 dispersed
Bpe12g00730 Bpe-Chr12:12803394 Bpe15g00056 Bpe-Chr15:7190164 3.57E-108 dispersed
Bpe15g00056 Bpe-Chr15:7190164 Bpe07g00511 Bpe-Chr7:10389657 9.52E-18 dispersed
Bpe15g00056 Bpe-Chr15:7190164 Bpe15g00277 Bpe-Chr15:14236773 1.62E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22533 PF00319 SRF-TF 1.50E-24 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00056 - - cit:102622898 301.982