Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00128 ATGGACACAAAACCAGACGATACTTCAGCATCATCTCAGGCAAACACTTCTGCTGTTACACCCTCTGAAGTACAACATAATATTGCAGTCACTTCTGAATCTGAGAATTTGAAACGTGATGTGCCATCTAGACTATCTTCTACTGGCTTATCTTCTTGGGCTAAGAGTTTGAAGATTACACAGCCTTTGATTGGATCACAAGATGTTTCACCAACTGCTCAGGCAGGAAAATCAAGTTTTTCACGTTTCACCAGTGGGTTTGGATTGCCGTTATCTCCAAAAGATCCTTCTCCAAAAGATGCCTCTGACAGCACTTTAAAATCTCATGAACCTGGTTTATTCGGGACACTTACAAAAGGTTTAGTTGATTCTTCTAGAAATGCTGTGAAGGCTGTGCAGGCCAAAGCTAGGCATGCTGTCTCTCAAAATAAACGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACATATATCACTGAAAACATAATTGCTATGGGATTCCCAGCTGGCGATATGAGTTCAGGGTTTTTTGGTTATGTTGAGGGTTTCTATCGGAACCACATGGAAGAAGTTATTAAATTCTTTGAAACTCATCATAAGGACAAGTACAAAGTGTACAATCTTTGTTCTGAGAGGCTGTACGATGCTTCATTGTTCGAAGGAAAGGTGGCTAGTTTTCCTTTTGATGACCATAATTGCCCCCCAGCTCGATTGATAATGTCATTTTGTCAAAGTGCTTACTCGTGGCTGAAGGAAGATATTGAAAATGTAGTGGTTGTGCATTGCAAAGCAGGGATGGCTAGAACAGGTTTGATGATATCTAGTCTTCTTCTATACCTGAAGTTTTTTCCAACTGCCGAGGAGTCCATTGACTACTACAACCAGAAAAGGTGTTTTGATGGCAAAGGCCTTATCCTACCTAGTCAGATTAGGTATGTCAAGTATTTTGAGCGCATATTAACATACTTCAATGGTGAAAATCCACCTGGCCGCAGGTGCATGCTTAGAGGATTTCGGCTTCATAGATGTCCACATTGGACCAGGCCGTCTATAACTGTGTCTGATCATAATGGTGTGTTCTCTTTGCTCTTTTATAGATTTAACCCTGACAACCATATGATTTCAATCGATCTACTACTTCCGGAAAACTTTTGGTTCAGTGCACCAAAGAAGGGGGTGATGGTTTTTGCTTTACCTGGGGAGCCTGGTCTAACAGAGTTGGTGGGGGACTTTAAGATCCACTTCCATGACCGCCAAGGAGATTTTTACTGTTGGCTGAACACAACTATGATTGAAAACCGCAAAATTCTGGACACTAATGATCTTGATGGGTTTGACAAGAGGAAACTGCCTTCCCCAGGATTTCAGGTCGAGGTTGTTTTAGTAGATTACGATGGTAGCATTCCTACGTCACCCAACACAGGAAATAATACAAAAACGTCAGATGAAAGATCAAGTTCGACTCCTGCTCCAATCGATGGGGGTTCAGCTACGCCAAAACCTACAGAAAATCCTGTAAATGAAGATAAATATGATGCATCTTCAGTCTTAGCAGCAGATGAGGGTGGTTCTTCAAAGGGCAAGCAAGGTGTTTCTTCTGGTTCAGTGATTGAACCTGCTACCTCTAATTCAACGGGTAAGGCTGAAGATGAAGTTAGGAATTTAACACAGGCAACGGAAGAAGTTTCTTTAGTAGACAGTATCCCAAAACGAATCGTATCCTCTGGGGAGCCCAAAAATGATGCTGGGACAAAAGTTTCCATCCAAGAGGCGTCAACCCCCGCAAGTGAGTTCAAGGCAATGGCTGCTGATGCTTCTGTCTTCACCTTTGGCAACGAGGACGATTACGAGACTGATTGA 1863 42.3 MDTKPDDTSASSQANTSAVTPSEVQHNIAVTSESENLKRDVPSRLSSTGLSSWAKSLKITQPLIGSQDVSPTAQAGKSSFSRFTSGFGLPLSPKDPSPKDASDSTLKSHEPGLFGTLTKGLVDSSRNAVKAVQAKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPARLIMSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHRCPHWTRPSITVSDHNGVFSLLFYRFNPDNHMISIDLLLPENFWFSAPKKGVMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMIENRKILDTNDLDGFDKRKLPSPGFQVEVVLVDYDGSIPTSPNTGNNTKTSDERSSSTPAPIDGGSATPKPTENPVNEDKYDASSVLAADEGGSSKGKQGVSSGSVIEPATSNSTGKAEDEVRNLTQATEEVSLVDSIPKRIVSSGEPKNDAGTKVSIQEASTPASEFKAMAADASVFTFGNEDDYETD 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 11205803 11211917 - Bpe001067.1 Bpe15g00128 115807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00128 620 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 620 - -
Bpe15g00128 620 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 620 - -
Bpe15g00128 620 ProSiteProfiles C2 tensin-type domain profile. 331 465 IPR014020 -
Bpe15g00128 620 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 408 462 IPR035892 -
Bpe15g00128 620 Gene3D - 351 467 - -
Bpe15g00128 620 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Bpe15g00128 620 Gene3D Protein tyrosine phosphatase superfamily 130 327 IPR029021 -
Bpe15g00128 620 MobiDBLite consensus disorder prediction 1 51 - -
Bpe15g00128 620 MobiDBLite consensus disorder prediction 527 552 - -
Bpe15g00128 620 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Bpe15g00128 620 MobiDBLite consensus disorder prediction 468 494 - -
Bpe15g00128 620 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 158 325 IPR029021 -
Bpe15g00128 620 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 259 298 IPR000387 GO:0016311|GO:0016791
Bpe15g00128 620 SMART PTEN_C2_2 329 464 IPR014020 -
Bpe15g00128 620 MobiDBLite consensus disorder prediction 87 109 - -
Bpe15g00128 620 MobiDBLite consensus disorder prediction 467 552 - -
Bpe15g00128 620 CDD PTP_PTEN 155 320 IPR045101 GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00128 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - mnt:21410065 850.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00128 Bpe-Chr15:11205803 Bpe14g00599 Bpe-Chr14:4986455 8.68E-07 dispersed
Bpe14g00158 Bpe-Chr14:2006929 Bpe15g00128 Bpe-Chr15:11205803 3.50E-47 transposed
Bpe12g00294 Bpe-Chr12:3694760 Bpe15g00128 Bpe-Chr15:11205803 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00128 Bpe_Chr15 FPKM 1.584599 1.590535 6.475608 6.605695 36.503731 31.89139 38.516445 4.528311 4.513282 4.898022