Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00166 ATGCATTCTTGCAGAGTGGAGGTCACGGATCCTGGATCGGAAAAACAGAACCCAGTGAAAGAAATCAGATTCAGGGGCGTAAGGAAGCGGCCGTGGGGTCGTTACGCCGCCGAAATCAGAGATCCTTGGAAAAAGACTCGGGTATGGCTTGGCACCTACGATTCGGCAGAGGACGCTGCGCGGGCCTACGACACCGCCGCTCGAAAACTCCGGGGGCCGAAGGCGAAGACGAATTTCCCTTTGATCCCTTCCACCATCTCTTTTCAGCAGCAAGTTCCATTTGCTTTATCGCCGGACTTGCTTGATGTAAATGGATTCCGCAATACGAGCAGTGTTCAGGTCAATAGACCTACGTCTAGCAGTTTGAGCTCCACCGTAGAGTCTTCCAGTGGCCTCAGGGTGTCCGTCCGGCCGTCTTCCGCTCCGAAGATCCACCGGATGGTTCCGCCGGATGATTGCCGCAGCGACTGCGACTCGTCTTCCTCTGTTGTCGATGACGGCAATGATTGCGCTCACACGTCTTCATTCCGCAGAGTCTTGCCGTTCGATCTGAATCTCCTTCCTCCGATGACCGGTTTGGATTAA 585 54.7 MHSCRVEVTDPGSEKQNPVKEIRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDSAEDAARAYDTAARKLRGPKAKTNFPLIPSTISFQQQVPFALSPDLLDVNGFRNTSSVQVNRPTSSSLSSTVESSSGLRVSVRPSSAPKIHRMVPPDDCRSDCDSSSSVVDDGNDCAHTSSFRRVLPFDLNLLPPMTGLD 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12143119 12143703 - Bpe001103.1 Bpe15g00166 115845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00166 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 18 180 - -
Bpe15g00166 194 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Bpe15g00166 194 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Bpe15g00166 194 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Bpe15g00166 194 MobiDBLite consensus disorder prediction 111 136 - -
Bpe15g00166 194 MobiDBLite consensus disorder prediction 111 152 - -
Bpe15g00166 194 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Bpe15g00166 194 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Bpe15g00166 194 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 180 - -
Bpe15g00166 194 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Bpe15g00166 194 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Bpe15g00166 194 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00335 Bpe-Chr4:2132206 Bpe15g00166 Bpe-Chr15:12143119 1.46E-33 dispersed
Bpe08g01010 Bpe-Chr8:12407811 Bpe15g00166 Bpe-Chr15:12143119 1.61E-31 dispersed
Bpe14g00619 Bpe-Chr14:5122835 Bpe15g00166 Bpe-Chr15:12143119 2.18E-61 dispersed
Bpe15g00166 Bpe-Chr15:12143119 Bpe15g00897 Bpe-Chr15:18866172 1.13E-25 dispersed
Bpe15g00166 Bpe-Chr15:12143119 Bpe07g00522 Bpe-Chr7:10998146 6.01E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22539 PF00847 AP2 1.20E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00166 K09286 - csv:101210265 206.068