Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00167 ATGCCAGACAATCTGCAAGTTCAGAAGAATGCTGGTTCGAATCAACCCAGTACTAACATTGAAGAATCTTTTTGGCGACTGAAGATCAGTGATCATCAAGGTGGTGGTGATGCAGCTCAATCTAATCCATTACCGGATCGGCCGGGTGAACCTGACTGCCCATATTATTTGAGGACCGGTTTGTGTGGCTATGGAAATAATTGTCGTTTTAATCACCCTGCTCATATTTCATTGATTGTGCAGAATGGTCGCAAAAATGGAGAACTTCCAGAAAGAGCTGGACAACCTGATTGTGAGTATTTTCTGAAGACGGGGACTTGTAAGTATGGCTCATCATGCAAGTATCATCATCCAAAGGATAGACGTGGAGCTGGACCGGTCGTGTTCAATATAATAGGCCTTCCCATGCGTCAGGATGAGAAACCGTGTCCTTATTATATGCGAACTGGATCGTGTAAGTTTGGAGTGGCATGCAAGTTTCATCATCCTCAGCCAGCATCTCATGGAGCTTTATTACCTCTAGCTGGTTCGGGTGCTTTTGGATCATCAGGATCTACTGCTGTGTCTACATCAGGTCTACCCTATTTATGGTCATTGCCTAGAATGCCATACATGCCTGCACTACCAGCACAAGGCCAACAGCCCTACGTGCCCGTTCTTTTTTCCCCCTCACGGCCTGTTGTGCCTGCACAGGGGTGGAATGCTTATGCGGGAAACACGAGTCATATGCCCTCTCCGACTATTTTTGCATCAAATCTCATTTACGACTCAAGGAATATGGCCAACGTGGGTTCTGGCCAGGTAATGTTATCAGCACCGAGTCCTACCCTTACTCCCGATAAACCAGAATGTCATAATTTTATTACCACTGGTACCTGTAAATTTGGATCGGACTGCAAGTACAACCATCCAAGCGAAAGAATGTTACAATCTGCAATTAATCCACCATGGCTCCCCTCAAGACCTGGGCAAGCTGTGTGTTCATACTACAGCATATATGGCGTGTGCAAGTTTGGCCCAAGTTGTAAATATGATCACCCAGTGGTGGCTTATCCGTACAGCTATGGCTTCATGCTTGATTCGTCCAATTTCACTTACCCAACAAACATATCAACCGAGACATCTCCAACACAGCCGTTGTTTAAATCTGCTGATTGGGTGGTTCAGAACTCTGATGGTGTGGGCAGCCAACATCAAAAGTCTGTCACAAAAGAAGATCTTCCTGAGGAGGAGCCTGATTCTCCTCCCCCTGCTGCTTCAGAGTCCTTCCATGATGACTCTGCCTGA 1287 46.23 MPDNLQVQKNAGSNQPSTNIEESFWRLKISDHQGGGDAAQSNPLPDRPGEPDCPYYLRTGLCGYGNNCRFNHPAHISLIVQNGRKNGELPERAGQPDCEYFLKTGTCKYGSSCKYHHPKDRRGAGPVVFNIIGLPMRQDEKPCPYYMRTGSCKFGVACKFHHPQPASHGALLPLAGSGAFGSSGSTAVSTSGLPYLWSLPRMPYMPALPAQGQQPYVPVLFSPSRPVVPAQGWNAYAGNTSHMPSPTIFASNLIYDSRNMANVGSGQVMLSAPSPTLTPDKPECHNFITTGTCKFGSDCKYNHPSERMLQSAINPPWLPSRPGQAVCSYYSIYGVCKFGPSCKYDHPVVAYPYSYGFMLDSSNFTYPTNISTETSPTQPLFKSADWVVQNSDGVGSQHQKSVTKEDLPEEEPDSPPPAASESFHDDSA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12145707 12148684 - Bpe001104.1 Bpe15g00167 115846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00167 428 SMART c3hfinal6 279 305 IPR000571 GO:0046872
Bpe15g00167 428 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Bpe15g00167 428 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Bpe15g00167 428 SMART c3hfinal6 321 348 IPR000571 GO:0046872
Bpe15g00167 428 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Bpe15g00167 428 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Bpe15g00167 428 Gene3D - 122 174 - -
Bpe15g00167 428 SUPERFAMILY CCCH zinc finger 317 347 IPR036855 GO:0046872
Bpe15g00167 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 347 IPR000571 GO:0046872
Bpe15g00167 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Bpe15g00167 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Bpe15g00167 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Bpe15g00167 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 304 IPR000571 GO:0046872
Bpe15g00167 428 SUPERFAMILY CCCH zinc finger 136 165 IPR036855 GO:0046872
Bpe15g00167 428 PANTHER PROTEIN PHOSPHATASE RELATED 6 406 - -
Bpe15g00167 428 Gene3D - 278 353 - -
Bpe15g00167 428 Gene3D - 46 121 - -
Bpe15g00167 428 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Bpe15g00167 428 MobiDBLite consensus disorder prediction 31 50 - -
Bpe15g00167 428 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Bpe15g00167 428 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Bpe15g00167 428 MobiDBLite consensus disorder prediction 1 22 - -
Bpe15g00167 428 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bpe15g00167 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 6 406 - -
Bpe15g00167 428 SUPERFAMILY CCCH zinc finger 282 306 IPR036855 GO:0046872
Bpe15g00167 428 MobiDBLite consensus disorder prediction 392 428 - -
Bpe15g00167 428 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Bpe15g00167 428 ProSiteProfiles Zinc finger C3H1-type profile. 321 349 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00167 - - - rcu:8265598 488.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00218 Bpe15g00167 CCT
Bpe13g00218 Bpe15g00167 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00654 Bpe-Chr13:13357877 Bpe15g00167 Bpe-Chr15:12145707 3.93E-67 dispersed
Bpe15g00167 Bpe-Chr15:12145707 Bpe15g00665 Bpe-Chr15:17350157 3.48E-60 dispersed
Bpe15g00167 Bpe-Chr15:12145707 Bpe12g00272 Bpe-Chr12:2850236 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003154 2 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 7 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22540 PF00642 zf-CCCH 9.50E-08 CL0537 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00167 Bpe_Chr15 FPKM 86.907013 86.634277 37.431648 46.540028 38.365757 33.565067 38.149342 79.606964 80.779236 77.026436