Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00176 ATGGGGATGAGGAGCGCAGTAGGAGAAATTGTCGAAGTCCAAGGTGGCCATATCGTCCGCTCCACTGGCAGGAAAGACCGCCACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGACGGGTTCGCCTATCAGCCCACACTGCCATTCAGTTCTACGATGTTCAAGACCGCTTAGGTTACGATCGACCGAGCAAAGCTGTTGACTGGCTAATAAAAAAGGCTAAGTCCACCATTGACAAGCTCGCAGAGCTACCACCTTGCTATCCCACCGCCGTTGCTGAAGAAGGCGACACGAATAATGGCGGAAACGGGATGCTGATTGCGGCAGAGAAGTCCGAGTCATGTGGCTACAATTTCCACCCCCAAAGGCATTTGGAGAGTCAAGAAAATGGCAATTCGGGTTTCGTTCCTCATCCGCTATTTTCCGTTCCCCTAACAGACACCATGAAAACCTTCTTCCCCACAAACTCTGCGACGTCCTCCATAAATTTCCAGACTTACCCACCCGATATACTTTCAAGAACCGCAAACCCCACTCAAGATCTTGGCCTCTCTCTCCATACTTTTCAAGATCCTGACCTGATTGACTCGCAGGTAGAGCAAATCCACTCGCCACAAAACGATCAAAACCTTTTTCCCGGTTCGCATCAGGTAGGATATGAACCGAGTTATCCGAGAATGGTGGCCTGGGGAAACGATAGAGGCGCAGAACATGGAGGTGGGTTTGTTTTCAACTCGATTCCAAATTTAAGCCAAGGTAGCTCGGCTGCATTTTCTCAGAGGGAACCCCTTCAGTCCAGTTACTCAACTTCTGTGTCAGTTCGAAGTTGGAATGATCTTTCAGTTGCTTCCGCCAAAGACCAGAAAACTCTTTCAGTTCACCAACCTTCGTTGTTTGGTACTCGTTTCGTTTCTGATGAGCTGACTGGCTTTTGCATCCCAGGTCAGATTCCAGCCAACGATGACCATGGTATGGTTTCGGAGAGATTGTCGTCTTCTTCTATGAGCTCTCACCATTAG 1023 49.56 MGMRSAVGEIVEVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSTIDKLAELPPCYPTAVAEEGDTNNGGNGMLIAAEKSESCGYNFHPQRHLESQENGNSGFVPHPLFSVPLTDTMKTFFPTNSATSSINFQTYPPDILSRTANPTQDLGLSLHTFQDPDLIDSQVEQIHSPQNDQNLFPGSHQVGYEPSYPRMVAWGNDRGAEHGGGFVFNSIPNLSQGSSAAFSQREPLQSSYSTSVSVRSWNDLSVASAKDQKTLSVHQPSLFGTRFVSDELTGFCIPGQIPANDDHGMVSERLSSSSMSSHH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12358051 12359073 - Bpe001113.1 Bpe15g00176 115855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00176 340 Pfam TCP family transcription factor 23 87 IPR017887 -
Bpe15g00176 340 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Bpe15g00176 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 98 IPR005333 GO:0003700
Bpe15g00176 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 121 340 IPR005333 GO:0003700
Bpe15g00176 340 PANTHER TRANSCRIPTION FACTOR TCP4 2 98 - -
Bpe15g00176 340 PANTHER TRANSCRIPTION FACTOR TCP4 121 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00176 - - - gmx:100796390 380.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe14g00626 Bpe15g00176 CCT
Bpe14g00626 Bpe15g00176 ECH
Bpe12g00216 Bpe15g00176 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01326 Bpe-Chr13:18426672 Bpe15g00176 Bpe-Chr15:12358051 7.31E-22 dispersed
Bpe14g00144 Bpe-Chr14:1901730 Bpe15g00176 Bpe-Chr15:12358051 2.72E-21 dispersed
Bpe15g00176 Bpe-Chr15:12358051 Bpe02g00984 Bpe-Chr2:9429808 2.18E-25 dispersed
Bpe12g00269 Bpe-Chr12:2698353 Bpe15g00176 Bpe-Chr15:12358051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g381 . . . Bda13g00642 Bpe12g00216 Bpe15g00176 Bma03g01315 Bma08g00624 Cmo11g01894 Cmo19g00942 . . . . . Cpe15g00742 . Bhi05g01338 . . . . . . Cla02g01720 Cam02g1809 Cec02g1833 Cco02g1877 Clacu02g1790 Cmu02g1741 Cre02g2065 . . . Cone12ag1426 Lsi10g01577 Csa07g00407 . Cme01g00430 . Blo13g00401 . Bda15g00949 Bpe14g00626 . Bma02g01348 . . . . Cma11g01820 Cma19g00917 Car11g01507 Car19g00817 . . . . . . . . . . . . . . . . Lsi11g01448 . Chy01g00433 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22541 PF03634 TCP 3.30E-30 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00176 Bpe_Chr15 FPKM 6.53089 8.833752 4.481703 6.036474 25.691458 22.712254 27.033739 1.120976 1.048104 0.693399