Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00180 ATGACAGCCATTGCTGGTCCAAGTGGGGCGGGGAAGACAACTCTGTTGGACATACTGGCTGGAAAGGTTCCACTGAATAGAATTTCTGGCCATGTTCTTGTGAATGATTTTCTAATGAATGAAAAAAAATTCCGCAGAATTTCGGGATATGTCACCCAAGAGGAAGCTCTTTTCCCACTTCTCACCGTAGAAGAAACACTCATGTATAGTGCTCGTCTGAGGCTGATCGGCGGGTCGGAAAAGGCGAAAGCTAGAGTGAGAGAGTTACTAACAGAGCTTGGACTAGAGCATGCAGCGCATCAAAGAATTGGAGACGAATCAAATCGGGGTATTTCCGGGGGTGAAAAAAGGAGGGTTTCGATTGGTGTTGATCTAGTTCATGACCCTGCTGTTCTTTTGCTTGATGAACCAACATCAGGGCTTGATTCAGCATCGGCTCTTCACATAGCATCGCTGCTAAAATCAATGGCTATAAGGCAAGGCAAGACTATTGTGCTAACTATTCATCAGCCTGGTTTCAGAATCCTAGAGCTGTTTGATCAAATTTTAATGTTGGCTAAAGGAATCCTCGTTCATAGCGGTTCGATGGAGCTCCTCGAGCAGCGGCTTCAACTCTCAGGTCACTCCATTCCTCGACATGTTAATGTTGTTGAATTCGCGATTGAAGTAGCTGATGGTCTTTTGGCTGATACCAAGCAGAATGGAACTGAAATTGGTACTAAAGAACGCGAGTACAGGCGTATAACAATGAATGCGAATTTCGTCAGTGTCGAGGGAGATGAAACTTTCTTCCCCAATTCTTTTGTGCAGGAGGTTTTCATTTTGAGTGAGAGATTCAGCATCCTCATATTCAGAACAAAACAGCTCTTCATGTCAAGGACCATTCAAGCAGTACTGGCTGGTTTTGTGCTTGGCTCTATATTCACTAATTCAAACGTCTCAAACAGCGTCAATCTACAATCACAAATCGGGTTCTTCGCCTTCAATCTCACCTTCTTGGTATCTTCCTCGGCCGAAGGTTTGGCGATTTACTTGCAGCAGAGAAGAATTTTGATGAGAGAAACCTCAAGAGGAGCTTATAGAGTCTCCTCGTCTGTTATCTCAGACACTCTCATCTTCCTTCCTTTCTTGTTGATCGTGTCTCTACTCTACACAATTCCGGTGTACTGGCTGGTCGGACTGAACAGAGAAATCGACGGGTTTCTTTACTTTTCTCTCCTGGCTTGGATGGTCGTTTTGATGTCTAATTCTGTGATTGCATGCTTCAGTGCTCTTGTTCCAGATTTCATGATGGGAACTTCCATAGTTTCTGCCTTTTTCGGGGCTTCCTTTCTGTTTTCTGGGTATTTCATTTCGAAGGGATCTATGCCAAGATACTGGATTTTCATGCATTATTTGAGTCTCTTCAAGTACCCTTTGGAGTGCTTAATGATAAATGAGTATGGAGGGAAAAGAGGGGAGAGACTGTGTTTGGCAAGCGAGGACGAGATTTGTTTCCTGCATGGCGATACCTTCTTGGTGCAGAGGGGCCTCCAACAGCGGGAAAAATGGAGTCATTTGGGTGTGATCTTAAGTTTCATTGTAGGCTACAGATTCATCTGCTTTCTCATTCTGTCCTACAGATCTTTAAGGGCCAAAAACTAG 1644 44.16 MTAIAGPSGAGKTTLLDILAGKVPLNRISGHVLVNDFLMNEKKFRRISGYVTQEEALFPLLTVEETLMYSARLRLIGGSEKAKARVRELLTELGLEHAAHQRIGDESNRGISGGEKRRVSIGVDLVHDPAVLLLDEPTSGLDSASALHIASLLKSMAIRQGKTIVLTIHQPGFRILELFDQILMLAKGILVHSGSMELLEQRLQLSGHSIPRHVNVVEFAIEVADGLLADTKQNGTEIGTKEREYRRITMNANFVSVEGDETFFPNSFVQEVFILSERFSILIFRTKQLFMSRTIQAVLAGFVLGSIFTNSNVSNSVNLQSQIGFFAFNLTFLVSSSAEGLAIYLQQRRILMRETSRGAYRVSSSVISDTLIFLPFLLIVSLLYTIPVYWLVGLNREIDGFLYFSLLAWMVVLMSNSVIACFSALVPDFMMGTSIVSAFFGASFLFSGYFISKGSMPRYWIFMHYLSLFKYPLECLMINEYGGKRGERLCLASEDEICFLHGDTFLVQRGLQQREKWSHLGVILSFIVGYRFICFLILSYRSLRAKN 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12539397 12541040 - Bpe001117.1 Bpe15g00180 115859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00180 547 SMART AAA_5 1 190 IPR003593 -
Bpe15g00180 547 Pfam ABC-2 type transporter 271 481 IPR013525 GO:0016020|GO:0140359
Bpe15g00180 547 Pfam ABC transporter 2 139 IPR003439 GO:0005524
Bpe15g00180 547 ProSitePatterns ABC transporters family signature. 111 125 IPR017871 GO:0005524
Bpe15g00180 547 Gene3D - 1 230 IPR027417 -
Bpe15g00180 547 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 1 539 - -
Bpe15g00180 547 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 539 - -
Bpe15g00180 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 204 IPR027417 -
Bpe15g00180 547 Pfam ABC-2 type transporter 169 236 IPR043926 GO:0140359
Bpe15g00180 547 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 212 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00180 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - pvy:116111072 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01691 Bpe-Chr4:22856956 Bpe15g00180 Bpe-Chr15:12539397 9.03E-108 dispersed
Bpe09g00254 Bpe-Chr9:1864082 Bpe15g00180 Bpe-Chr15:12539397 0 dispersed
Bpe13g00055 Bpe-Chr13:1654911 Bpe15g00180 Bpe-Chr15:12539397 3.66E-143 dispersed
Bpe15g00180 Bpe-Chr15:12539397 Bpe03g00714 Bpe-Chr3:27271084 5.83E-70 dispersed
Bpe15g00180 Bpe-Chr15:12539397 Bpe15g01306 Bpe-Chr15:21317675 2.11E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00180 Bpe_Chr15 FPKM 11.640053 14.884319 5.923797 6.571803 13.54932 9.218502 14.920331 5.105165 5.032973 6.312856