Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00222 ATGGAGAGCAACCAGCAAGCTCAGTCTTCTTCATTCCCGACAGCTCAGCCTCCTCCTCCGCCGTCTCAATTTCACCATCTTCTCCAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAGGAAATCGAACAGGTTAATGAGTTCAAGAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTGTTCATCCTCGAGCTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGAACTCTGCAGAAGAATGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGGGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCGAGTGGCGTACCGTACTATTACCCTCCTTTAGGACAGCCGGCAGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATCCCACCGGAATGTACATGCAGCCGCCTTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCTGAAGATGGGACATATGGGAGTGGAGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGAGATTTCGCCAAGGACAGCGTTCGTCTTGTCAAGAGGTGTCACAAGCCTGATCGTAAAGAGTTCACCAAGGTTGCGTTTCGTACGGCGGTCGGCTTTGTGGTGATGGGGTTCGTTGGATTCTTCGTAAAGTTGATTTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAA 834 52.04 MESNQQAQSSSFPTAQPPPPPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEGGLEGVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAVGFVVMGFVGFFVKLIFIPINNIIVGSG 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13346986 13350323 - Bpe001158.1 Bpe15g00222 115901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00222 277 MobiDBLite consensus disorder prediction 1 24 - -
Bpe15g00222 277 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 3 219 - -
Bpe15g00222 277 SUPERFAMILY Preprotein translocase SecE subunit 216 273 IPR023391 -
Bpe15g00222 277 Gene3D Histone, subunit A 22 134 IPR009072 GO:0046982
Bpe15g00222 277 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 220 274 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bpe15g00222 277 ProSitePatterns Protein secE/sec61-gamma signature. 222 250 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe15g00222 277 Hamap Protein translocase subunit SecE [secE]. 217 272 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe15g00222 277 Pfam SecE/Sec61-gamma subunits of protein translocation complex 221 273 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe15g00222 277 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 219 - -
Bpe15g00222 277 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 119 IPR003958 -
Bpe15g00222 277 Gene3D Preprotein translocase SecE subunit 217 276 IPR023391 -
Bpe15g00222 277 SUPERFAMILY Histone-fold 19 128 IPR009072 GO:0046982
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00200 Bpe15g00222 CCT
Bpe12g00479 Bpe15g00222 CCT
Bpe12g00479 Bpe15g00222 ECH
Bpe13g00200 Bpe15g00222 ECH
Bpe07g00892 Bpe15g00222 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00039 Bpe-Chr12:321227 Bpe15g00222 Bpe-Chr15:13346986 3.50E-64 dispersed
Bpe15g00222 Bpe-Chr15:13346986 Bpe15g00914 Bpe-Chr15:18944838 2.90E-69 dispersed
Bpe01g00338 Bpe-Chr1:2125765 Bpe15g00222 Bpe-Chr15:13346986 7.35E-11 transposed
Bpe13g00200 Bpe-Chr13:9976332 Bpe15g00222 Bpe-Chr15:13346986 0 wgd
Bpe15g00222 Bpe-Chr15:13346986 Bpe07g00892 Bpe-Chr7:14974056 2.25E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22545 PF00808 CBFD_NFYB_HMF 8.80E-18 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00222 - - csv:101213576 321.627