Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00223 ATGCCTAATCAAGTCGGCTCTTCGAGGAGAAGTTTGTCGTTGATGAATGTGTCATCACCGGGAAAAAAGAAAAGCTCCGAAAATGGAAGTCTTGACAGTTCTAATTCTCGGAAGTTTCTTTCATCTTCTCGTTCTATGGGTTCGACAAGTGAGCGTACAGTTAAACGTTTGCGACTGTCAAAGGCCCTGACCATACCTGAAAGCACAAGTATCTATGAGGCATGTCGTAGAATGGTTGCACGTAGAGTTGATGCTGTATTACTTACTGACTCCAATACATTGCTATGTGGAATACTAACGGACAAGGATATTGCAACTAGAGTCATTGCTCGTGAGATTAATCTCGAGGAAACACCTGTCTCTAAAGTTATGACAAGGAACCCGGTTTTTGTTCTTTCTGACACTCTTGCTGTGGATGCTCTTCAGAAGATGGTGCAAGGTAAGTGCAATAATGAGAGCCGGATCCAAAAGAGTTATTTAACTATGCTTTCCAAGTTGATAACAATGTCTATTACTGCAGGAAAGTTTAGGCATTTGCCTATTGTGGAGAATGGAGAGGTCATTGCTTTGCTTGATATAGCAAAATGTTTATACGACGCAATTGCTCGCTTGGAAAGGGCTGCTGAGAAGGGAAAGGCTATTGCTGCGGCTGTAGTAGGTGTCGAAAAAAATTGGGGAACATCTATTTCTGTAGGTCCAAACACCTTCATGGAGACACTTCGAGAAATGATATTTAGACCATCGTTGTCCACGCTCATCTCAGAGAATTCAAAGATTATAACTGTTTCACCCACAGAAACAGTTCTCTCAACAACAAAGAAAATGCTTGAACTTCGGCTAAGTGCTGCAGTTATAACAGTTGATAATAAACCACGTGGAATTTTGACTTCAAAGGATATCTTGACACGGGTTATTGCACAAGATCTTCCAGCAGAGTTAACTCTGGTAGAAAAGGTAATGACTCCAAATCCAGAATGTGGAACTGTTGATACACCAATAGTTGATGCCCTACATACTATGCATGATGGAAAATTCTTGCACCTTCCTGTAATGAACAGAGATGGGAATATCGTTGCTGTCATTGATGTGATACATATTACTCATGCTGCTGTTGCCACAGTAATTTCTTCACTATTCCACCTTATGCAGGTTGGAAGTACTCCTGGTACCGATAATGAGATTTCCAGCTCCATGATGCATAAGTTTTGGGATTCAGCCATGTCATTAACTACCAACGAGGATGATGAGACTCAGAGCGAAAGTTCATTGAAGTTAAATTCTACTCAGGATACGGATTCTGGAAGACGTCCTTCGTCTAATCTTCAAAATACTTTTTCTTTTAAAATTCAAGACAAAAAGGGAAGAACACATCGATTTATGTGTGATACTAGGAGTTTGACGGATGTTATAACAGCAATCCTTCAGAGAGTGGGAGATGACATTAATAGAAACAGCCTACCACAGATCATGTACGAGGATGAAGACAATGACAAAGTTGTACTGGCATCAGATGGTGATCTAACAGCGGCTGTAGAGCATGCAAAGTCTGCGGGTTTGAAGGAATTGGAGAAAGCAATCCTTAAAACTCAGAAAAATGCAACAATTCAGGCCATGGAAGACACCAAAGATGGTCATTATTTGGTGGTGATTGTCTCAGGCAAGTATATACGAGCAGAAGTTGACGGAGGCTTTGGCCGAGACGTGATTGAGTTTTTGGTAAAAGGAGATGTTGTTGCTTACAGGACCATGGCAACAAAAGTGACGTATATTTATCCCTTCACTACATCTTTAGGCGACTCGAAAGGACAGGAAGAGCGTATGAAGAAAATTATAGACGAATTGGGCTGGTATGCTCCGAGTTTTGATTCCATGGATTAA 1878 41.0 MPNQVGSSRRSLSLMNVSSPGKKKSSENGSLDSSNSRKFLSSSRSMGSTSERTVKRLRLSKALTIPESTSIYEACRRMVARRVDAVLLTDSNTLLCGILTDKDIATRVIAREINLEETPVSKVMTRNPVFVLSDTLAVDALQKMVQGKCNNESRIQKSYLTMLSKLITMSITAGKFRHLPIVENGEVIALLDIAKCLYDAIARLERAAEKGKAIAAAVVGVEKNWGTSISVGPNTFMETLREMIFRPSLSTLISENSKIITVSPTETVLSTTKKMLELRLSAAVITVDNKPRGILTSKDILTRVIAQDLPAELTLVEKVMTPNPECGTVDTPIVDALHTMHDGKFLHLPVMNRDGNIVAVIDVIHITHAAVATVISSLFHLMQVGSTPGTDNEISSSMMHKFWDSAMSLTTNEDDETQSESSLKLNSTQDTDSGRRPSSNLQNTFSFKIQDKKGRTHRFMCDTRSLTDVITAILQRVGDDINRNSLPQIMYEDEDNDKVVLASDGDLTAAVEHAKSAGLKELEKAILKTQKNATIQAMEDTKDGHYLVVIVSGKYIRAEVDGGFGRDVIEFLVKGDVVAYRTMATKVTYIYPFTTSLGDSKGQEERMKKIIDELGWYAPSFDSMD 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13351646 13361360 - Bpe001159.1 Bpe15g00223 115902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00223 625 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 21 148 IPR034896 -
Bpe15g00223 625 SUPERFAMILY CBS-domain pair 257 369 IPR046342 -
Bpe15g00223 625 ProSiteProfiles CBS domain profile. 58 117 IPR000644 -
Bpe15g00223 625 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 148 - -
Bpe15g00223 625 SUPERFAMILY CBS-domain pair 51 149 IPR046342 -
Bpe15g00223 625 Gene3D - 444 526 - -
Bpe15g00223 625 Pfam CBS domain 316 368 IPR000644 -
Bpe15g00223 625 Pfam CBS domain 60 106 IPR000644 -
Bpe15g00223 625 Pfam CBS domain 256 303 IPR000644 -
Bpe15g00223 625 Pfam PB1 domain 444 520 IPR000270 GO:0005515
Bpe15g00223 625 Gene3D - 32 151 IPR046342 -
Bpe15g00223 625 MobiDBLite consensus disorder prediction 411 443 - -
Bpe15g00223 625 ProSiteProfiles CBS domain profile. 320 377 IPR000644 -
Bpe15g00223 625 CDD CBS_pair_MUG70_2 256 372 - -
Bpe15g00223 625 ProSiteProfiles CBS domain profile. 253 312 IPR000644 -
Bpe15g00223 625 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 173 533 - -
Bpe15g00223 625 ProSiteProfiles PB1 domain profile. 442 526 IPR000270 GO:0005515
Bpe15g00223 625 SMART cbs_1 61 109 IPR000644 -
Bpe15g00223 625 SMART cbs_1 323 371 IPR000644 -
Bpe15g00223 625 SMART cbs_1 258 305 IPR000644 -
Bpe15g00223 625 MobiDBLite consensus disorder prediction 1 53 - -
Bpe15g00223 625 SUPERFAMILY CAD & PB1 domains 433 520 - -
Bpe15g00223 625 Gene3D - 248 374 IPR046342 -
Bpe15g00223 625 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 173 533 IPR034896 -
Bpe15g00223 625 SMART PB1_new 444 529 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00223 - - - csv:101212621 669.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00476 Bpe15g00223 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00476 Bpe-Chr12:10516739 Bpe15g00223 Bpe-Chr15:13351646 0 dispersed
Bpe13g00199 Bpe-Chr13:9968689 Bpe15g00223 Bpe-Chr15:13351646 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00223 Bpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.402504 0.767156 0.0 0.0 0.0