Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe15g00225 | ATGGCATCATCTTCTCTATCTGGACCATCGAAGAGGCAGCGAGGAGCTTCAAACGGGTCTCAGCAGCTGCAGTGCTTGGTCGACGGGTGTAACTCAGACCTTAGCAACTGCAGAGATTACCACCGGCGGCACAAGGTTTGTGAGCTTCATGCAAAGACTGCCCAAGTTATAATTCGTGGCCTGAACCAGAGATTCTGTCAGCAATGTAGCAGATTCCATTCACTGGAGGAATTTGACGAGGGGAAGCGAAGTTGCCGAAAGCGCCTCGATGGGCATAACAGAAGAAGAAGAAAGCCACAGCCGGAGCCACTCCGGGCAGAACCTGACGCAAGTATTTTGTGTAGTTACCAAGGTTCTGGTTTACTACCACTCCATGGCGAACAGAGTATCAAAGCTGAGGCAGATTCCAGGTTTCTTCATCAATATCATCGAGTAAATTTCTTCCATGAACAATTCCCTTTTGATGAATCTTCCACATCTATTGGAAGAGGTTGTGAAGGAGGAGAATCTGTCAATCCCCGTCCACTTCTTCCACCACCAGTGGCGCTCCCTGTGTACAGCGATTGTGCTCTCTCTCTTCTGTCATCACCCACAACCCTGCCATCTCCGATCAATCCGATCTGCTTTGCACAGCCGGCTCTGCAACATCCTTCACGCTACATGAGTCTGCAGCCTGTTCCCGTGGATTCAGATCAGCCTCCCACTTTCAAGAATGATGAGTTCAACTCCCCATCATTTCCTTCTCTTTGGGATCAGTAA | 759 | 49.41 | MASSSLSGPSKRQRGASNGSQQLQCLVDGCNSDLSNCRDYHRRHKVCELHAKTAQVIIRGLNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLRAEPDASILCSYQGSGLLPLHGEQSIKAEADSRFLHQYHRVNFFHEQFPFDESSTSIGRGCEGGESVNPRPLLPPPVALPVYSDCALSLLSSPTTLPSPINPICFAQPALQHPSRYMSLQPVPVDSDQPPTFKNDEFNSPSFPSLWDQ | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 13365051 | 13366248 | - | Bpe001160.1 | Bpe15g00225 | 115904 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe15g00225 | 252 | MobiDBLite | consensus disorder prediction | 228 | 252 | - | - | |
| Bpe15g00225 | 252 | Pfam | SBP domain | 25 | 98 | IPR004333 | GO:0003677 | |
| Bpe15g00225 | 252 | SUPERFAMILY | SBT domain | 24 | 104 | IPR036893 | GO:0003677|GO:0005634 | |
| Bpe15g00225 | 252 | Gene3D | - | 15 | 86 | IPR036893 | GO:0003677|GO:0005634 | |
| Bpe15g00225 | 252 | ProSiteProfiles | Zinc finger SBP-type profile. | 22 | 99 | IPR004333 | GO:0003677 | |
| Bpe15g00225 | 252 | MobiDBLite | consensus disorder prediction | 223 | 252 | - | - | |
| Bpe15g00225 | 252 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED | 11 | 221 | - | - | |
| Bpe15g00225 | 252 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 11 | 221 | IPR044817 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe09g00547 | Bpe-Chr9:14250979 | Bpe15g00225 | Bpe-Chr15:13365051 | 1.45E-42 | dispersed | |
| Bpe12g00474 | Bpe-Chr12:10506324 | Bpe15g00225 | Bpe-Chr15:13365051 | 2.17E-48 | dispersed | |
| Bpe12g00517 | Bpe-Chr12:11022094 | Bpe15g00225 | Bpe-Chr15:13365051 | 3.03E-37 | dispersed | |
| Bpe15g00225 | Bpe-Chr15:13365051 | Bpe15g00569 | Bpe-Chr15:16710114 | 9.28E-35 | dispersed | |
| Bpe15g00225 | Bpe-Chr15:13365051 | Bpe07g00895 | Bpe-Chr7:14987920 | 4.03E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22546 | PF03110 | SBP | 1.10E-30 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe15g00225 | - | - | vvi:100261045 | 202.601 |