Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00225 ATGGCATCATCTTCTCTATCTGGACCATCGAAGAGGCAGCGAGGAGCTTCAAACGGGTCTCAGCAGCTGCAGTGCTTGGTCGACGGGTGTAACTCAGACCTTAGCAACTGCAGAGATTACCACCGGCGGCACAAGGTTTGTGAGCTTCATGCAAAGACTGCCCAAGTTATAATTCGTGGCCTGAACCAGAGATTCTGTCAGCAATGTAGCAGATTCCATTCACTGGAGGAATTTGACGAGGGGAAGCGAAGTTGCCGAAAGCGCCTCGATGGGCATAACAGAAGAAGAAGAAAGCCACAGCCGGAGCCACTCCGGGCAGAACCTGACGCAAGTATTTTGTGTAGTTACCAAGGTTCTGGTTTACTACCACTCCATGGCGAACAGAGTATCAAAGCTGAGGCAGATTCCAGGTTTCTTCATCAATATCATCGAGTAAATTTCTTCCATGAACAATTCCCTTTTGATGAATCTTCCACATCTATTGGAAGAGGTTGTGAAGGAGGAGAATCTGTCAATCCCCGTCCACTTCTTCCACCACCAGTGGCGCTCCCTGTGTACAGCGATTGTGCTCTCTCTCTTCTGTCATCACCCACAACCCTGCCATCTCCGATCAATCCGATCTGCTTTGCACAGCCGGCTCTGCAACATCCTTCACGCTACATGAGTCTGCAGCCTGTTCCCGTGGATTCAGATCAGCCTCCCACTTTCAAGAATGATGAGTTCAACTCCCCATCATTTCCTTCTCTTTGGGATCAGTAA 759 49.41 MASSSLSGPSKRQRGASNGSQQLQCLVDGCNSDLSNCRDYHRRHKVCELHAKTAQVIIRGLNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLRAEPDASILCSYQGSGLLPLHGEQSIKAEADSRFLHQYHRVNFFHEQFPFDESSTSIGRGCEGGESVNPRPLLPPPVALPVYSDCALSLLSSPTTLPSPINPICFAQPALQHPSRYMSLQPVPVDSDQPPTFKNDEFNSPSFPSLWDQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13365051 13366248 - Bpe001160.1 Bpe15g00225 115904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00225 252 MobiDBLite consensus disorder prediction 228 252 - -
Bpe15g00225 252 Pfam SBP domain 25 98 IPR004333 GO:0003677
Bpe15g00225 252 SUPERFAMILY SBT domain 24 104 IPR036893 GO:0003677|GO:0005634
Bpe15g00225 252 Gene3D - 15 86 IPR036893 GO:0003677|GO:0005634
Bpe15g00225 252 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677
Bpe15g00225 252 MobiDBLite consensus disorder prediction 223 252 - -
Bpe15g00225 252 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 11 221 - -
Bpe15g00225 252 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 221 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00225 - - - vvi:100261045 202.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00547 Bpe-Chr9:14250979 Bpe15g00225 Bpe-Chr15:13365051 1.45E-42 dispersed
Bpe12g00474 Bpe-Chr12:10506324 Bpe15g00225 Bpe-Chr15:13365051 2.17E-48 dispersed
Bpe12g00517 Bpe-Chr12:11022094 Bpe15g00225 Bpe-Chr15:13365051 3.03E-37 dispersed
Bpe15g00225 Bpe-Chr15:13365051 Bpe15g00569 Bpe-Chr15:16710114 9.28E-35 dispersed
Bpe15g00225 Bpe-Chr15:13365051 Bpe07g00895 Bpe-Chr7:14987920 4.03E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50670 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50670 63.6 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024505 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22546 PF03110 SBP 1.10E-30 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00225 Bpe_Chr15 FPKM 22.67676 25.248692 4.819745 4.830646 5.973246 5.308495 5.965571 6.477436 5.659172 5.712567