Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00229 ATGGATTTGATTCACAAGCTTCTTAATATTTTCCTCCCTCCATTCGCACTTCTTCTTTGTCTTTGCTCTCTCCCATTTCTGCTGACTTTCAAGCTTCTTTCTTTCCTCAAAGCCTGTGTCTCTTCTGAAAACGTTTCTGGCAAGGTGGTTCTGGTCACCGGAGCATCTTCTGGAATCGGAGAGTACGTAGCTTATGAATATGCGAAGAGGAAGGCTCGTTTGGCCCTCGTTGCCAGAAGAGAGGAACGCCTTCTGAAGGTCGCCGGTGAAGCCCGCCGGTTGGGGTCACCTGATGTTATTGTGATCTGTGCTGATGTTTCTAAGATGGAAGACTGTAAGCGATTTGTGGGCGAGACAGTGGGCCATTTTGGGCAACTGGATCATTTGGTGAGCAACGCTGGTGTTGTGCATACAGCTTTGTTTGAAGAAATCCCCATTGACGAGCTTTCTCAAGCCAGCTCGATTATGGGAATAAACTTCTGGGGATCTGTCTACGCCACCCATTTTGGGATTCAGCATCTTCGTAAGAGCAAGGGAAAACTCGTTGTTATTTCTTCATCTGCAGCATGGCTTTGTGCCCCAAGACTAGCCCTCTACAGTGCTAGCAAAGCAGCTCAATTCACTTTCTTTGAGATACTGAGGGCGGAGCTTGGCTTTGATGTTGGAATCACCATTGTCACTCCCGGTCTTGTTCGTTCAGAGATCGCAACAAGCCAATTTATGTCACAGGTAGACAGTTCTGGTTCACATTGCCTTAAACAAATTGAAATCACTTTTGACAGAAAACAAGGAATGTTTGATAGTAATGATGACTTGTATGCTTTGCAGCTGAGGTTGAAGAATGTGGTGCCATTGGAGTCGACAGAAGGGTGTGCAAGAGCAATAGTTGCAGGCGTTTGCAGGGGAGATGAGTTCTTGACGGAGCCGTGGTGGTATACAGTGTTGTTTTGGATGAAGCTCTTCTGCCCACAAGTCATGCAATGGAGTTTGCACCGCTACTTTGTAGAGTGA 1011 46.59 MDLIHKLLNIFLPPFALLLCLCSLPFLLTFKLLSFLKACVSSENVSGKVVLVTGASSGIGEYVAYEYAKRKARLALVARREERLLKVAGEARRLGSPDVIVICADVSKMEDCKRFVGETVGHFGQLDHLVSNAGVVHTALFEEIPIDELSQASSIMGINFWGSVYATHFGIQHLRKSKGKLVVISSSAAWLCAPRLALYSASKAAQFTFFEILRAELGFDVGITIVTPGLVRSEIATSQFMSQVDSSGSHCLKQIEITFDRKQGMFDSNDDLYALQLRLKNVVPLESTEGCARAIVAGVCRGDEFLTEPWWYTVLFWMKLFCPQVMQWSLHRYFVE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13447314 13448694 + Bpe001164.2 Bpe15g00229 115908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00229 336 Gene3D - 34 335 - -
Bpe15g00229 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Bpe15g00229 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Bpe15g00229 336 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 IPR002347 -
Bpe15g00229 336 PANTHER - 1 248 - -
Bpe15g00229 336 PANTHER - 282 334 - -
Bpe15g00229 336 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Bpe15g00229 336 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Bpe15g00229 336 PRINTS Glucose/ribitol dehydrogenase family signature 199 218 IPR002347 -
Bpe15g00229 336 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Bpe15g00229 336 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Bpe15g00229 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 334 IPR036291 -
Bpe15g00229 336 Pfam short chain dehydrogenase 48 239 IPR002347 -
Bpe15g00229 336 PANTHER RETINOL DEHYDROGENASE-RELATED 1 248 - -
Bpe15g00229 336 PANTHER RETINOL DEHYDROGENASE-RELATED 282 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00229 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - qsu:112001748 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01581 Bpe-Chr2:18783691 Bpe15g00229 Bpe-Chr15:13447314 2.54E-75 dispersed
Bpe15g00229 Bpe-Chr15:13447314 Bpe02g01869 Bpe-Chr2:20739837 4.27E-15 dispersed
Bpe15g00229 Bpe-Chr15:13447314 Bpe14g00302 Bpe-Chr14:3027386 2.63E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00229 Bpe_Chr15 FPKM 30.130787 28.091455 44.534248 46.017162 28.613489 26.191622 29.19453 64.581352 62.361755 68.886269