Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00240 ATGAATAGTGTATTTAGCGAGCAGATACTTGCTGATAAGCTGTCGAAGCTCAATAGCACCCAGCAGTGTATTGAAACATTGTCACATTGGTGTATTTTTCATCGGGGCAAAGCAGAACTGGTTGTTGCAACATGGGACAAACAGTTTCATAGTTCCGATATGGTTCAAAAAGTTCCTCTTTTGTACCTTGCAAATGATATTTTACAGAACAGCAAGCGCAAAGGAAACGAATTTGTGACAGAGTTCTGGAAAGTCCTCCCAGGAGCACTTGCGGATGTGCTTGAGAAAGGCGATGATCATGGGAAGAATACAGTCTCAAGATTGGTTGATATATGGGAACAAAGGAGAGTCTTTGGATCCCGCCCACAAAGCCTCCAAGATATTATGCTTGGGAAAGAAGTTCCAGCCCCTTTAGAGTTTAACAAAAAACGATCACGGTCTGTCAAAATTGTTAGAAGGGATTTACGCTCTATCAGAACGAAATTGTCCATTGGAAGTGCAGCTGAAAAAATAGTATCTGCATTCCATTTGGTGCTTAGTGAACATGCCAATGAAGATACGGAGATGAGAAAATGCAAGACTGCAGTACATTGTGTGAGGAAGATGGAGAAAGATGTTGATATTGCATGCTCTAATAAAAAAGATCCCAAGCGAAAAACTTTGTCCAAGGAACTTGAGGAGGAAGAAAATATCTTGAAACAATGTATTGAAAAACTGAAGTCAGTAGAGGCAGGTAGAGCAGCCCTTGTTTCACAGTTAAAAGAAGCTTTACACGAACAGGAGTCGGAGCTAGAAAATGTCCGAACTCAGATGCAGGTGGCGCAAGTGCAAGCAGAAGAAGCAAACATAATGCGGAAGCGACTGAACGATGAAAATTACCTTTCAAAACCTTCCACTACTTCCAACGATAACAATAACATAGAAGCCAGACGTACACCAATGAAGTCAGCTGCAGCAATTGCAGCTGAAGTAGCAGACAAGCTCACAGCCTCTACCTCATCTCAGATGATAATGACATCCGTACTTTCTACATTTGCTGCAGAAGAGGCAAAGAACAACGGCCTAACATCCTCAACCTCTGCTCCTGATTTGATTTCAAAACCCGAAAAATCAATGGTTATTTCCGATTCAAGTGTTTATTTGTCTGTTCAGCCACGTTCAGCTCCCCCTAATCAGTCATACCAATCCGTTCTAGTTGCCCAACAGGCCATGCTTAGTCATGTTCCAAGCTCTCAACCTCAATTTCACATGCTACCCAATGGAGTTCCCTCTCAGCAGTATATGAACAACCCCTATGGATATGCTAGTATTACACCCTTGCCTAGAGTAGCACCGCCTCCTCTGCCACCGCACGTGGTGACTTCGATGATGCCTTTGAATCAGCCTTTGATGCAAATCACTCAACACTCATCTTCAATGACAGTTCCTGTGGCTCAGCAGCCGCCTGCTCCGCCGAGCTTCCGGCCACTTCCACCGCCGGGAATGGTCTACTACGGTCAGATTCATCATTCTCAATGA 1518 43.81 MNSVFSEQILADKLSKLNSTQQCIETLSHWCIFHRGKAELVVATWDKQFHSSDMVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPGALADVLEKGDDHGKNTVSRLVDIWEQRRVFGSRPQSLQDIMLGKEVPAPLEFNKKRSRSVKIVRRDLRSIRTKLSIGSAAEKIVSAFHLVLSEHANEDTEMRKCKTAVHCVRKMEKDVDIACSNKKDPKRKTLSKELEEEENILKQCIEKLKSVEAGRAALVSQLKEALHEQESELENVRTQMQVAQVQAEEANIMRKRLNDENYLSKPSTTSNDNNNIEARRTPMKSAAAIAAEVADKLTASTSSQMIMTSVLSTFAAEEAKNNGLTSSTSAPDLISKPEKSMVISDSSVYLSVQPRSAPPNQSYQSVLVAQQAMLSHVPSSQPQFHMLPNGVPSQQYMNNPYGYASITPLPRVAPPPLPPHVVTSMMPLNQPLMQITQHSSSMTVPVAQQPPAPPSFRPLPPPGMVYYGQIHHSQ 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13675039 13678643 - Bpe001176.1 Bpe15g00240 115919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00240 505 CDD CID_RPRD_like 7 121 - -
Bpe15g00240 505 Coils Coil 250 291 - -
Bpe15g00240 505 MobiDBLite consensus disorder prediction 293 308 - -
Bpe15g00240 505 PANTHER ENTH/VHS FAMILY PROTEIN 1 504 - -
Bpe15g00240 505 MobiDBLite consensus disorder prediction 289 308 - -
Bpe15g00240 505 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 504 - -
Bpe15g00240 505 SUPERFAMILY ENTH/VHS domain 8 117 IPR008942 -
Bpe15g00240 505 Pfam CID domain 9 120 IPR006569 -
Bpe15g00240 505 Gene3D - 2 130 IPR008942 -
Bpe15g00240 505 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Bpe15g00240 505 Coils Coil 218 245 - -
Bpe15g00240 505 SMART 558neu5 9 130 IPR006569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00240 K15559 RTT103; regulator of Ty1 transposition protein 103 - jre:109013260 679.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01355 Bpe-Chr4:20109503 Bpe15g00240 Bpe-Chr15:13675039 9.29E-86 dispersed
Bpe09g00554 Bpe-Chr9:14307717 Bpe15g00240 Bpe-Chr15:13675039 1.76E-91 dispersed
Bpe15g00240 Bpe-Chr15:13675039 Bpe03g01063 Bpe-Chr3:29865168 4.21E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g2 . Blo16g00315 . Bda15g00749 . . Bma06g00299 . . . Cma10g00005 . Car10g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00240 . Bma08g00287 . Cmo10g00003 . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001770 2 2 3 2 2 1 4 1 1 2 1 1 3 2 2 2 1 3 4 1 2 2 2 2 2 1 2 6 7 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00240 Bpe_Chr15 FPKM 0.0 0.0 0.0 0.0 1.365139 1.110737 1.643556 0.0 0.143404 0.190909