Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00259 ATGGCAAGAGAAAAGATTCAGATCAAGAAGATCGACAGCCTGACGGCTCGACAGGTGACCTTCTCTAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTGAGGAGCTTGCAGTTCTCTGCGATGCCGATGTTGGCCTTATTATCTTCTCCTCTACTGGAAAACTCTTCGAATACGCCAGCTCAAGTATGAAGGAAATTCTGGATAGGCAAAATCTACATTCTAAGAATCTGCAGAAGCTGGAGCAGCCTTCGCTCGAGTTGCAGCTAGTGGAGAACAGCAACTACAGGATGCTGAACAAGGAAATAGCACATAGAAGCCATCGATTAAGGCAGATGAGAGGAGAGGAGCTCCAAGGGCTGAACGTAGAAGAACTGCTGCAACTTGAGAAAACGTTGGAATCTGGATTAAACCGTGTGATGGAGAAGAAGAACTCACGGCAATCAAATCAAATTGTAAAACTTTGCAGAGCAAGTTCTCAGATTAACCCTTTTTTTATTTCTCTCAATGGGGTTGTAAAGGTGGAGATGGATAATGGAAGAAAGGAGGTGAGAGAGGAGGAGGCAGACGACGTGGTTGCAGAAGAGGGGCAGTCATCGGAATCAGTCACGAACGTCTGCAACTCCGGTGGGGCTCCCGTTGACGATGACAGTTCTGATACATCTCTGAAGTTGGGGTCAGTACAGTTTTATCTTTCGACTTTACTGGTCATTTTTTATTTAAAGTGA 723 45.09 MAREKIQIKKIDSLTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYASSSMKEILDRQNLHSKNLQKLEQPSLELQLVENSNYRMLNKEIAHRSHRLRQMRGEELQGLNVEELLQLEKTLESGLNRVMEKKNSRQSNQIVKLCRASSQINPFFISLNGVVKVEMDNGRKEVREEEADDVVAEEGQSSESVTNVCNSGGAPVDDDSSDTSLKLGSVQFYLSTLLVIFYLK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 13954296 13956502 + Bpe001200.3 Bpe15g00259 115938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00259 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 226 - -
Bpe15g00259 240 Pfam K-box region 92 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe15g00259 240 MobiDBLite consensus disorder prediction 195 216 - -
Bpe15g00259 240 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Bpe15g00259 240 MobiDBLite consensus disorder prediction 192 216 - -
Bpe15g00259 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bpe15g00259 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Bpe15g00259 240 ProSiteProfiles K-box domain profile. 87 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe15g00259 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe15g00259 240 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01150 Bpe-Chr2:15107315 Bpe15g00259 Bpe-Chr15:13954296 1.98E-49 dispersed
Bpe12g00712 Bpe-Chr12:12675896 Bpe15g00259 Bpe-Chr15:13954296 4.59E-45 dispersed
Bpe15g00259 Bpe-Chr15:13954296 Bpe02g00148 Bpe-Chr2:1012227 2.85E-38 dispersed
Bpe15g00259 Bpe-Chr15:13954296 Bpe14g00486 Bpe-Chr14:4328779 6.28E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22549 PF01486 K-box 7.20E-10 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00259 - - qsu:112018313 290.812