Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00269 ATGGATAATGGGCTTCTGCAAGTCACTTTATCAACTCCGAGCGGCCATGTCACCGGTGTAAAGTACAACGGGATCGGAAACTTGCTTGAAGTTCAGAATTCAGCCAACAATAGAGGGTACTGGGATATTGTCTGGAACAGACCTGGAGAAGGAAACTCCATCGACAGATTAGGAGGAGCAAGCTTGAGGGTTGTAGTGCAAACTGAAGACCAGTTGGAGCTTTCATTCACAAGAACATGGACATCTTCATCTAATAATACCAATCTTCCTCTAAATATAGACAAAAGGTACATATTACTACGTGGATCTTCTGGGTTTTATACGTACTCCATATTAGAGAGGCTACAAGGGTGGCCGGCTATTGAGATGGATCAAATCCGAGCTGTTTATAAGTTTCAGAACGAAAAATTTCGCTACATGGCAGTAGCGGACGACATGCAGAGGATCATGCCGACGCAGCAGGATCGAAAGACGGGTAATCGGCTGGCTTATCCGGAGGCTGTTCTTTTAACCGACCCTGTGGTCGAAGATGTGAGAGGAGAGGTGGATGATAAGTACATGTACTCGCTTGAGGATAAAGACAACAAAGTTCATGGCTGGATCTGTGCGGACCCACCGACTGGAATCTGGATGATCACGCCCAGTGATGAGTTCCGCGTGGCTGGGCCCGTCAAGCAGGATCTTACCTCCCATGTCGGCCCTACTACGCTCGCTCAGATGTTTGTGAGTACCCATTATGCCGGGAAGGAGGTGGGAATGCGGTTTGGGGAAGGAGAGCCATGGAAGAAGGTTTTCGGCCCTGTTTTCGTCTATCTTAACTCTCTTCCTGAAAAGGCAGACCCTCTTGATCTCTGGGACGACGCGAAACTGCAGATGGGGAAAGAAGTGGATAGCTGGCCTTACAGTTTTCCTGAGTCGGCGGATTTTCCTACTTCTGCACAGAGAGGAACAGTGAGCGGTCAATTGCTAGTCCGTGATCGGTACATTAATGAATCCCTCATTTCGGCTGATCGAGCGTATGTTGGACTGGCATTGCCTGGAGATTCGGGATCCTGGCAAAGAGAAAGCAAGAGAAGTTTCATCATCTTCATCATCATCATTTTACAGGGTTATCAGTTCTGGACACTAGCAGACAAAGACGGCAACTTCTCAATTAAAAATATTAGACCTGGGACATACAATCTGTACGCTTGGGTCCCTGGCTTTATCGGAGACTACAAATACGAAACTAACGTGACAGTCGAACCCGGGAGTGCAATAGGCTTAGACAACCTCGTGTTCGAGCTTCCTCGACATGGTCCCACCTTTTGGGAAATTGGCATCCCCGACCGAACTGCAGCTGAGTTTTTCGTGCCAAGCCCCTACCCAACTCTCATGAACCGGCTATACTACGAACCGAAAAACAATTTTAGGCAATATGGCTTGTGGGACCGTTATGGCGATTTGTATCCAACGGCGGATCTGGTCTACAACGTCGGTGATAATTATACAACCAATTGGTTCTTCGCTCATGTTACCAGGAAAAACGGAAATGGAACTTACGACGCAACGACTTGGCAGATCGTATTTCAACTCGACACTTTGGACAAGTCTGGAACTTATACACTCCAACTAGCGTTAGCCTCTGCTACAGAATCTGAAGTGCAGGTACGGTGGAACGACCCGGCTGGAAAGCCTCACTTTTCAACCGGATTAATAGGGAGGGATAATGCGATTGCGAGACATGGAATTCACGGGCTGTACTGGTTGTATTCTGTAAATGTAGGCGGCCAAATGCTTGTTTTAGGGAAGAACACAATCTACCTGACTCAATCCAGACATCAAACTCCTTTCCAAGGAGTAATGTATGACTACATTCGATTTGAAGGGCCGCCTACTTGA 1881 47.42 MDNGLLQVTLSTPSGHVTGVKYNGIGNLLEVQNSANNRGYWDIVWNRPGEGNSIDRLGGASLRVVVQTEDQLELSFTRTWTSSSNNTNLPLNIDKRYILLRGSSGFYTYSILERLQGWPAIEMDQIRAVYKFQNEKFRYMAVADDMQRIMPTQQDRKTGNRLAYPEAVLLTDPVVEDVRGEVDDKYMYSLEDKDNKVHGWICADPPTGIWMITPSDEFRVAGPVKQDLTSHVGPTTLAQMFVSTHYAGKEVGMRFGEGEPWKKVFGPVFVYLNSLPEKADPLDLWDDAKLQMGKEVDSWPYSFPESADFPTSAQRGTVSGQLLVRDRYINESLISADRAYVGLALPGDSGSWQRESKRSFIIFIIIILQGYQFWTLADKDGNFSIKNIRPGTYNLYAWVPGFIGDYKYETNVTVEPGSAIGLDNLVFELPRHGPTFWEIGIPDRTAAEFFVPSPYPTLMNRLYYEPKNNFRQYGLWDRYGDLYPTADLVYNVGDNYTTNWFFAHVTRKNGNGTYDATTWQIVFQLDTLDKSGTYTLQLALASATESEVQVRWNDPAGKPHFSTGLIGRDNAIARHGIHGLYWLYSVNVGGQMLVLGKNTIYLTQSRHQTPFQGVMYDYIRFEGPPT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14078914 14081841 - Bpe001208.1 Bpe15g00269 115948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00269 626 CDD RGL4_N 1 274 - -
Bpe15g00269 626 Gene3D - 1 278 IPR014718 GO:0030246
Bpe15g00269 626 CDD RGL4_C 437 622 - -
Bpe15g00269 626 SUPERFAMILY Starch-binding domain-like 359 423 IPR013784 GO:0030246
Bpe15g00269 626 Pfam Rhamnogalacturonate lyase family 1 182 IPR010325 -
Bpe15g00269 626 SUPERFAMILY Galactose-binding domain-like 433 622 IPR008979 -
Bpe15g00269 626 Gene3D - 433 621 - -
Bpe15g00269 626 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 625 - -
Bpe15g00269 626 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 625 - -
Bpe15g00269 626 Gene3D - 311 423 - -
Bpe15g00269 626 Pfam Polysaccharide lyase family 4, domain II 337 420 IPR029413 -
Bpe15g00269 626 SUPERFAMILY Galactose mutarotase-like 4 274 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bpe15g00269 626 CDD RGL4_M 314 425 IPR029413 -
Bpe15g00269 626 Pfam Polysaccharide lyase family 4, domain III 435 620 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00412 Bpe-Chr4:2597790 Bpe15g00269 Bpe-Chr15:14078914 0 dispersed
Bpe08g00006 Bpe-Chr8:48871 Bpe15g00269 Bpe-Chr15:14078914 0 dispersed
Bpe15g00269 Bpe-Chr15:14078914 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00269 K18195 - jre:109003646 853.588