Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00301 ACCATGAGAGCTCATTATTCGAGCTTCTTTTTCTTTCTATCATTACCTATAGTCCTTCTCCCAGTCGCCATTAATGGTTCCACCAAAGCTCAAACCACAACTTACAGACGGGTTCTCCACCAGCCGCTTTTTCCGGATACCTCCACGCCGCCACCGGATGTCTCCTTAACCCCACCACCACCCCCGCCAGTAGATCCTTCTTATTCCAATCCAGAGGACCAGCCCTTTTTTCACGAATCCCCTACAGTACCGAACTCTGATCAGAATCAACCCCCTCCTTCGTCTTCAAACGTCAATTCTTCGATTCCGGAAGCTACTCAGCCGTCCAAATCGACGAAAACTGTCGCGATTGCAATCTCAGTCGGAATTGTCACTCTGGGAATGCTCTCTGCTCTTGCATTCTTCCTATATCGTCACCGGGTTAAACATGCCGGAGATTCTCAGAAGCTAGTCGGAGGCAACAATGGCGATAGATATCCAGAAAACTCGAGAGTACCGCCATCCAGCATTCTTTACATCGGCACCGTCGAACCGAGCCAAACCTCCGTCGTCGAACCGAGAACAGTAAACGGCGCCAGTACTTCTCCTTATCGCAAGCTTAATTCCATTAAAATGTCGGATCGGTACCGTCCTAGTCCAGAATTGCAGCCGCTTCCACCTCTACCGAAACCGCTAGTGGCGAAATCTCTGTCTCCATCGTCATCTTCTGATGACGAAAACCACGAGACGGCATTTCATACACCGCAAGGCTCGTCGGTGATCAGTAACGAGGATGGGTATGGTCAATCCGTAAACCATGTTTCGTCAGCCACAGTAAAATCCGATAAGAATTCAAATTTTTCTGTTCCTCATTCTAAAAGAACTTCTCCTAAATCCCGGCTTTCTGTATCGTCGTCAAAGGTCCGTCAGTCTCCAGTGCCACCGTCGCCTCCTCCTCCTCCTCCAACATCGCCTTTTCAGCAGCCTCAGCATCAGATTTCTTCAAAGAGGCCTAAATTCTCAATGCATCCACCTCCACCGAATTTGGCTCTCCTTCAATCACTAAGCAATTCGTCTCCAAATCCACAAATAGTCAGAAAACCTGGTCCTCCACATCCACCTCCACCACCTCCTCCTCCGGCATTTCCACCATTGATTTCAAAACCTAGGAAAGTTAAACCTTCAGAAAGGAGTGTACCCTCGACACCAACTCCATTGTCCTCGAAAGCAGTGTCTTGGAGCGCAACCAAGTCCAAATCTAACTCTCCTCCTAATTCTGGATTATCAAATTCTGTTGAACAAGTCCATAGAAGCGTAAGCTCGTCAGAGAAGCTTGAAACAGACGATTCAGAAGGTGTTAAGCCGAAATTGAAGCCCCTGCATTGGGACAAAGTACGGGCCACTTCCGGGAGAGCCACAGTTTGGGACCAACTGAAATCAAGCTCATTCCAAGTAAACGAGGACATGATGGAAACTCTTTTTGGCTTCAACTCTGCAAATTCAGCCTCAAAAGAGCCTGCCAGAAAGACAATCTTCCCTTCTTCTATGGAGAAGGAAAATAGGGTGTTGGACCCGAAGAAATCACAGAATATTGCAATCCTACTTAGAGCTCTAAACGTTACACACGATGAAGTGGCCGAAGCTCTTTCCGATGGTAATCCAGAATGCTTAGGCCCAGAGCTTTTGGAAACTCTTGTGAAAATGGCTCCAACCAAAGAAGAAGAGATAAAACTGAGAGACTATCGAGGCGACATCTCAAAACTTGGGTCTGCAGAGAGATTTCTCAAGGCAGTCCTCGATATCCCATTTGCCTTTAAAAGAGTTGAAGCCATGCTATACAGAGCCAATTTCGACACAGAAGTGAATTACCTGAGAAAAGCATTTCAAACACTGGAGGCAGCAAGTGATGAACTCAAGAATAGCCGGCTATTCCTTAAACTCCTCGAAGCAGTTCTCAAGACAGGAAATCGAATGAATGTGGGTACAAATCGCGGTGATGCAAAAGCTTTCAAGCTTGAGACTCTCTTAAAACTAGTCGATGTAAAAGGGACGGATGGCAAGACGACATTGCTTCACTTTGTCGTCCAAGAAATGATTCGATCCGAAGGTGAAGGTGGTGAAACTACAAATGGAAATCTTCCTACCAAAACAGGTTCCAATTTGAAGGAGGACCAATTCAAGAAGCAAGGGTTGAAGATTGTGGCTGGGCTGAGCAGAGACCTCATCAATGTGAAAAAAGCAGCTGGTATGGACTCAGATGTGTTGAGTAGCTATGTATCCAAGCTGGAAATGGGTCTAGAGAAAGTAAGATTGGTTTTGCATATCGGGAAGCCTGATGTGCAGGCTACATTTTTCGACTCGATGAACATTTTTCTCCAGGAGGCTGAAGAGGAAATAGATCGGATTAAAGCCGACGAAAAGAAAGCATTATGGCTTGTGAAAGGAGTGACTGAATACTTTCATGGGGATGCAGTAAAAGAAGAAGCTCATCCTCTGAGAATATTTATGATTGTTAAGGATTTCTTGAGTATATTGGATCAAGTGTGCAAAGAAGTGGGGAGGATGCAAGAAGTAGTGGTGGGTTCGGCTCGATCTTTTCAACTACCGTCATCTGTATCGTTACCAGTCCTCAGCCGGTACAACGTGAGACAGGATCACAGCTCTGACAAAGAAAGCTCATCACCC 2664 46.13 TMRAHYSSFFFFLSLPIVLLPVAINGSTKAQTTTYRRVLHQPLFPDTSTPPPDVSLTPPPPPPVDPSYSNPEDQPFFHESPTVPNSDQNQPPPSSSNVNSSIPEATQPSKSTKTVAIAISVGIVTLGMLSALAFFLYRHRVKHAGDSQKLVGGNNGDRYPENSRVPPSSILYIGTVEPSQTSVVEPRTVNGASTSPYRKLNSIKMSDRYRPSPELQPLPPLPKPLVAKSLSPSSSSDDENHETAFHTPQGSSVISNEDGYGQSVNHVSSATVKSDKNSNFSVPHSKRTSPKSRLSVSSSKVRQSPVPPSPPPPPPTSPFQQPQHQISSKRPKFSMHPPPPNLALLQSLSNSSPNPQIVRKPGPPHPPPPPPPPAFPPLISKPRKVKPSERSVPSTPTPLSSKAVSWSATKSKSNSPPNSGLSNSVEQVHRSVSSSEKLETDDSEGVKPKLKPLHWDKVRATSGRATVWDQLKSSSFQVNEDMMETLFGFNSANSASKEPARKTIFPSSMEKENRVLDPKKSQNIAILLRALNVTHDEVAEALSDGNPECLGPELLETLVKMAPTKEEEIKLRDYRGDISKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDTEVNYLRKAFQTLEAASDELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDVKGTDGKTTLLHFVVQEMIRSEGEGGETTNGNLPTKTGSNLKEDQFKKQGLKIVAGLSRDLINVKKAAGMDSDVLSSYVSKLEMGLEKVRLVLHIGKPDVQATFFDSMNIFLQEAEEEIDRIKADEKKALWLVKGVTEYFHGDAVKEEAHPLRIFMIVKDFLSILDQVCKEVGRMQEVVVGSARSFQLPSSVSLPVLSRYNVRQDHSSDKESSSP 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 14472919 14476435 - Bpe024554 Bpe15g00301 115980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00301 888 MobiDBLite consensus disorder prediction 45 69 - -
Bpe15g00301 888 Coils Coil 785 805 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 245 303 - -
Bpe15g00301 888 PANTHER FORMIN-LIKE PROTEIN 6 26 888 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 180 201 - -
Bpe15g00301 888 Pfam Formin Homology 2 Domain 445 838 IPR015425 -
Bpe15g00301 888 SUPERFAMILY Formin homology 2 domain (FH2 domain) 363 850 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 432 450 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 147 168 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 357 380 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 390 431 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 73 113 - -
Bpe15g00301 888 PANTHER FORMIN-RELATED 26 888 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe15g00301 888 SMART it6_source 440 853 IPR015425 -
Bpe15g00301 888 Gene3D Formin, FH2 domain 446 852 IPR042201 -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 180 450 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 42 113 - -
Bpe15g00301 888 MobiDBLite consensus disorder prediction 304 320 - -
Bpe15g00301 888 ProSiteProfiles Formin homology-2 (FH2) domain profile. 440 864 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00301 - - - csv:101208011 949.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00127 Bpe15g00301 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00592 Bpe-Chr7:12464239 Bpe15g00301 Bpe-Chr15:14472919 9.69E-120 dispersed
Bpe10g00755 Bpe-Chr10:13845484 Bpe15g00301 Bpe-Chr15:14472919 1.63E-166 dispersed
Bpe11g00522 Bpe-Chr11:4059409 Bpe15g00301 Bpe-Chr15:14472919 2.46E-118 dispersed
Bpe11g01744 Bpe-Chr11:13797836 Bpe15g00301 Bpe-Chr15:14472919 2.16E-90 dispersed
Bpe11g01834 Bpe-Chr11:14743671 Bpe15g00301 Bpe-Chr15:14472919 4.07E-169 dispersed
Bpe14g00693 Bpe-Chr14:5444870 Bpe15g00301 Bpe-Chr15:14472919 1.92E-112 dispersed
Bpe15g00622 Bpe-Chr15:17072206 Bpe15g00301 Bpe-Chr15:14472919 5.39E-77 dispersed
Bpe05g00226 Bpe-Chr5:14389873 Bpe15g00301 Bpe-Chr15:14472919 3.62E-137 transposed
Bpe13g00127 Bpe-Chr13:8255194 Bpe15g00301 Bpe-Chr15:14472919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00755 . 126 615 FH2 protein (formin) Gene Family AT3G25500 66.7 1.2e-170 597.4
Bpe15g00301 CCT 431 868 FH2 protein (formin) Gene Family AT3G25500 59.2 3.9e-132 469.5
Bpe13g00127 CCT 423 883 FH2 protein (formin) Gene Family AT3G25500 56.2 2.9e-127 453.4
Bpe05g00226 . 473 872 FH2 protein (formin) Gene Family AT3G25500 55.4 9.4e-110 395.2
Bpe10g00755 . 177 628 FH2 protein (formin) Gene Family AT2G43800 63.7 3.7e-147 519.2
Bpe15g00301 CCT 435 884 FH2 protein (formin) Gene Family AT2G43800 53.8 8.8e-125 444.9
Bpe13g00127 CCT 421 904 FH2 protein (formin) Gene Family AT2G43800 50.9 2.7e-118 423.3
Bpe07g00592 BCT 30 318 FH2 protein (formin) Gene Family AT4G15200 58.1 9.4e-62 234.6
Bpe14g00693 BCT 265 553 FH2 protein (formin) Gene Family AT4G15200 54.5 1.2e-56 217.6
Bpe11g00522 CCT,ECH 498 647 FH2 protein (formin) Gene Family AT4G15200 62.3 5.0e-47 185.7
Bpe08g01143 CCT,ECH 207 354 FH2 protein (formin) Gene Family AT4G15200 61.1 4.7e-45 179.1
Bpe11g00522 CCT,ECH 270 963 FH2 protein (formin) Gene Family AT5G54650 52.2 2.1e-166 583.2
Bpe07g00592 BCT 172 639 FH2 protein (formin) Gene Family AT5G54650 64.3 9.7e-164 574.3
Bpe14g00693 BCT 412 882 FH2 protein (formin) Gene Family AT5G54650 61.3 2.5e-151 533.1
Bpe08g01143 CCT,ECH 217 621 FH2 protein (formin) Gene Family AT5G54650 65.0 1.6e-145 513.8
Bpe05g00226 . 471 877 FH2 protein (formin) Gene Family AT5G54650 52.0 2.3e-109 393.7
Bpe15g00301 CCT 27 887 FH2 protein (formin) Gene Family AT5G67470 54.3 1.2e-219 760.0
Bpe13g00127 CCT 34 911 FH2 protein (formin) Gene Family AT5G67470 54.3 7.6e-201 697.6
Bpe11g01834 . 441 920 FH2 protein (formin) Gene Family AT5G67470 56.7 1.8e-133 473.8
Bpe10g00755 . 173 632 FH2 protein (formin) Gene Family AT5G67470 57.2 9.1e-130 461.5
Bpe05g00226 . 476 875 FH2 protein (formin) Gene Family AT5G67470 53.4 3.1e-109 393.3
Bpe10g00820 CCT,ECH 333 815 FH2 protein (formin) Gene Family AT1G59910 50.9 1.8e-120 430.6
Bpe11g01744 CCT,ECH 267 739 FH2 protein (formin) Gene Family AT1G59910 50.3 2.9e-118 423.3
Bpe13g00300 CCT 994 1304 FH2 protein (formin) Gene Family AT5G07650 75.6 1.3e-127 454.1
Bpe15g00594 CCT 1490 1809 FH2 protein (formin) Gene Family AT5G07650 72.2 2.5e-123 439.9
Bpe14g00599 . 1000 1332 FH2 protein (formin) Gene Family AT5G07650 58.2 2.3e-100 363.6
Bpe13g00300 CCT 918 1305 FH2 protein (formin) Gene Family AT5G07770 68.4 1.1e-139 493.8
Bpe15g00594 CCT 1414 1804 FH2 protein (formin) Gene Family AT5G07770 65.8 2.0e-133 473.0
Bpe14g00599 . 936 1345 FH2 protein (formin) Gene Family AT5G07770 53.6 1.2e-106 384.0
Bpe14g00599 . 930 1334 FH2 protein (formin) Gene Family AT3G32400 69.2 9.4e-153 537.0
Bpe13g00300 CCT 906 1307 FH2 protein (formin) Gene Family AT3G32400 63.7 1.1e-137 486.9
Bpe15g00594 CCT 1414 1809 FH2 protein (formin) Gene Family AT3G32400 64.3 1.1e-137 486.9
Bpe14g00599 . 1 1334 FH2 protein (formin) Gene Family AT2G25050 50.7 1.8e-303 1038.9
Bpe13g00300 CCT 919 1307 FH2 protein (formin) Gene Family AT5G07780 62.3 6.8e-121 431.0
Bpe15g00594 CCT 1415 1809 FH2 protein (formin) Gene Family AT5G07780 60.6 5.4e-118 421.4
Bpe14g00599 . 937 1332 FH2 protein (formin) Gene Family AT5G07780 51.1 2.1e-93 339.7
Bpe13g00300 CCT 1 1307 FH2 protein (formin) Gene Family AT5G07740 51.0 0.0e+00 1102.8
Bpe13g00300 CCT 993 1307 FH2 protein (formin) Gene Family AT5G07760 74.1 1.1e-124 444.5
Bpe15g00594 CCT 1489 1809 FH2 protein (formin) Gene Family AT5G07760 71.1 2.8e-120 429.9
Bpe14g00599 . 1011 1332 FH2 protein (formin) Gene Family AT5G07760 60.1 4.7e-99 359.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00301 Bpe_Chr15 FPKM 41.291073 39.266064 49.869274 51.239487 31.419352 37.457962 32.78455 76.44223 81.007515 75.306824